RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 CLOCKO15516 846 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 ARHGEF9O43307 516 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 CXCR1P25024 350 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 EDNRAP25101 427 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 HOXC12P31275 282 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 CLK1P49759 484 aaKnown RBP11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 ATP4BP51164 291 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 COPZ1P61923 177 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 LARS2Q15031 903 aaKnown RBP11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 RGNQ15493 299 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 TAB1Q15750 504 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 Q5PR19 223 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 CCDC103Q8IW40 242 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF440Q8IYI8 595 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 HSD17B8Q92506 261 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 APH1AQ96BI3 265 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 PIP5K1AQ99755 562 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 POTEKPQ9BYX7 375 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 RAD21L1Q9H4I0 556 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 ARMC7Q9H6L4 198 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 NGBQ9NPG2 151 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 SLC25A37Q9NYZ2 338 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF232Q9UNY5 417 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 DSPPQ9NZW4 1301 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 SPG11Q96JI7 2443 aa11.25□□□□□ -0.61
NPLOC4-213ENST00000573519 A0A0G2JPF8 293 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF716A6NP11 495 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HNRNPCL2B2RXH8 293 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HNRNPCL3B7ZW38 293 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 C5orf58C9J3I9 102 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 FAAHO00519 579 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF208O43345 1280 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 DNPH1O43598 174 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HNRNPCL1O60812 293 aaKnown RBP11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 RAMP1O60894 148 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 CD3EP07766 207 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HNRNPCL4P0DMR1 293 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 IMPDH2P12268 514 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HOXB9P17482 250 aaPredicted RBP11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 SLC35A1P78382 337 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 GUCY1A3Q02108 690 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 HSP90B2PQ58FF3 399 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF311Q5JNZ3 666 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 SHEQ5VZ18 495 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 AKAP1Q92667 903 aaKnown RBP eCLIP11.24□□□□□ -0.612e-6■■■■□ 24.6
NPLOC4-213ENST00000573519 MAL2Q969L2 176 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 NAA11Q9BSU3 229 aaPredicted RBP11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 TMEM120AQ9BXJ8 343 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 ZNF385DQ9H6B1 395 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 ESRP2Q9H6T0 727 aaKnown RBP11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 FGFR1OP2Q9NVK5 253 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 TRAPPC4Q9Y296 219 aa11.24□□□□□ -0.61
NPLOC4-213ENST00000573519 IGKV3D-15A0A087WSY6 115 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CIB4A0PJX0 185 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 ZC3H12DA2A288 527 aaKnown RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CCT8L1PA6NM43 557 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 GPR171O14626 319 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 HS3ST1O14792 307 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 EIF1BO60739 113 aaKnown RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 MRPL33O75394 65 aaKnown RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 RAD51DO75771 328 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 THBS1P07996 1170 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 VIMP08670 466 aaKnown RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 PRG2P13727 222 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 GGT1P19440 569 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 IGHV1-2P23083 117 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 ADSLP30566 484 aaPredicted RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 IDUAP35475 653 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 BNIP2Q12982 314 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 FADDQ13158 208 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CEACAM7Q14002 265 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 PDK3Q15120 406 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 PPA1Q15181 289 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 OR7A5Q15622 319 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 LRIF1Q5T3J3 769 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 RNF220Q5VTB9 566 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 FBXW9Q5XUX1 488 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 WBP2NLQ6ICG8 309 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CGB2Q6NT52 195 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CASP12Q6UXS9 341 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 ATG4DQ86TL0 474 aaPredicted RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 LRRC75A-AS1Q8N1F1 130 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 C10orf111Q8N326 155 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 CLIP4Q8N3C7 705 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 TMEM171Q8WVE6 324 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 STON2Q8WXE9 905 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 MUCL1Q96DR8 90 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 USB1Q9BQ65 265 aaKnown RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 SPATA9Q9BWV2 254 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 ADAM19Q9H013 955 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 GSX1Q9H4S2 264 aaPredicted RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 RABEP2Q9H5N1 569 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 A4GALTQ9NPC4 353 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 VAPAQ9P0L0 249 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 TRIM33Q9UPN9 1127 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 IFT52Q9Y366 437 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 RNF115Q9Y4L5 304 aa11.23□□□□□ -0.61
NPLOC4-213ENST00000573519 VPS13CQ709C8 3753 aa11.22□□□□□ -0.61
NPLOC4-213ENST00000573519 A0A1W2PP18 115 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms