RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 KIR3DX1Q9H7L2 352 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SEC61A2Q9H9S3 476 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 EXOSC3Q9NQT5 275 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TAS2R16Q9NYV7 291 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PSORS1C1Q9UIG5 152 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 DNAJC25-GNG10A0A024R161 153 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CCDC163A0A0D9SF12 145 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PMS2P1A4D2B8 440 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 HIDE1A8MVS5 230 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TSTD3H0UI37 97 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CYP27C1Q4G0S4 372 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 RAET1LQ5VY80 246 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CNIH2Q6PI25 160 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 COMMD6Q7Z4G1 85 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TMED4Q7Z7H5 227 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 NAA40Q86UY6 237 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF687Q8N1G0 1237 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 S100PBPQ96BU1 408 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 MED30Q96HR3 178 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 RNF170Q96K19 258 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 MKRN2Q9H000 416 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 METTL9Q9H1A3 318 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLC25A32Q9H2D1 315 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FBXL4Q9UKA2 621 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 WIF1Q9Y5W5 379 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TRAV6A0A075B6T7 132 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLC22A23A1A5C7 686 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 KRBA1A5PL33 1030 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF736B4DX44 427 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 E9PI62 339 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CCL22O00626 93 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 MAOBP27338 520 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TNFRSF17Q02223 184 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 RELAQ04206 551 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PCGF3Q3KNV8 242 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF542PQ5EBM4 170 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLX4IPQ5VYV7 408 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PHC2Q8IXK0 858 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 KLHDC8AQ8IYD2 350 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR1N1Q8NGS0 311 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 RHOXF1Q8NHV9 184 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CPT1CQ8TCG5 803 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FBXW5Q969U6 566 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF286AQ9HBT8 521 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 MAN2C1Q9NTJ4 1040 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 KCNS2Q9ULS6 477 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PSAT1Q9Y617 370 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 A0A1W2PQL4 384 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CD8B2A6NJW9 211 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 VILLO15195 856 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SURF4O15260 269 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 MITFO75030 526 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CNMDO75829 334 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 TPPPO94811 219 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 MBP02144 154 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 FABP1P07148 127 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CSF3P09919 207 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SP9P0CG40 484 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CD8BP10966 210 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 FPR3P25089 353 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 AOAHP28039 575 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CD79BP40259 229 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CEBPGP53567 150 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 RAB8AP61006 207 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 EVX2Q03828 476 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 HNRNPA1L2Q32P51 320 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 PARM1Q6UWI2 310 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR4M1Q8NGD0 313 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR52E2Q8NGJ4 325 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 TBC1D15Q8TC07 691 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 DCUN1D4Q92564 292 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SLC6A18Q96N87 628 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 ARL6Q9H0F7 186 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 PPIL3Q9H2H8 161 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 C2orf72A6NCS6 295 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 FMO6PO60774 539 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 UBL3O95164 117 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 AMY2AP04746 511 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CA5AP35218 305 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 RGS6P49758 472 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SCAND1P57086 179 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 DCDP81605 110 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CHAF1BQ13112 559 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 LILRB2Q8N423 598 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 C12orf45Q8N5I9 185 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR7G3Q8NG95 312 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR4K5Q8NGD3 323 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR13F1Q8NGS4 319 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 LILRB4Q8NHJ6 448 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 ELMOD3Q96FG2 381 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 PAQR5Q9NXK6 330 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 BABAM2Q9NXR7 383 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 STEAP1Q9UHE8 339 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 YBX2Q9Y2T7 364 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 RBMX2Q9Y388 322 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 MYH4Q9Y623 1939 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 C2orf92A0A1B0GVN3 265 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 C2orf78A6NCI8 922 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 GGT3PA6NGU5 568 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 I6L893 689 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms