RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TM4SF18Q96CE8 201 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SLC38A3Q99624 504 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TMED9Q9BVK6 235 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SDHAF2Q9NX18 166 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 COQ3Q9NZJ6 369 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR6C68A6NDL8 312 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CPSF4LA6NMK7 179 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ARL6IP5O75915 188 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TFP02787 698 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ITGB2P05107 769 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RAB13P51153 203 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 HSD11B2P80365 405 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ANKRD16Q6P6B7 361 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF433Q8N7K0 673 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR14C36Q8NHC7 312 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RNF138Q8WVD3 245 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 DNAJA3Q96EY1 480 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZDHHC5Q9C0B5 715 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF350Q9GZX5 532 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ENKD1Q9H0I2 346 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NRIP3Q9NQ35 241 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 UBQLN2Q9UHD9 624 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SPIN1Q9Y657 262 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GPR39O43194 453 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 EIF1BO60739 113 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RLN1P04808 185 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CD5P06127 495 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NAT2P11245 290 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IFI30P13284 250 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ADRA2CP18825 462 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 EIF1P41567 113 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZXDBP98169 803 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SNAPC1Q16533 368 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 MST1LQ2TV78 715 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ATP13A5Q4VNC0 1218 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR2G6Q5TZ20 316 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SLC24A5Q71RS6 500 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF280BQ86YH2 543 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TCEANCQ8N8B7 351 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR5M8Q8NGP6 311 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SAMD8Q96LT4 415 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 MESP1Q9BRJ9 268 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NUDT15Q9NV35 164 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CHRNA9Q9UGM1 479 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SIGLEC7Q9Y286 467 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NUP210LQ5VU65 1888 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 LOC102723532A0A0G2JNH3 316 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SCGB1D2O95969 90 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC35G4P0C7Q5 338 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GIMD1P0DJR0 217 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CHRNB4P30926 498 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ACSL1P33121 698 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 IGFALSP35858 605 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 H2BFSP57053 126 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SELENOVP59797 346 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 COA6Q5JTJ3 125 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CLLU1OSQ5K130 101 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 DLK2Q6UY11 383 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TAS1R1Q7RTX1 841 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ARMC10Q8N2F6 343 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LRRC17Q8N6Y2 441 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 BADQ92934 168 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC27A6Q9Y2P4 619 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RBM7Q9Y580 266 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ETV7Q9Y603 341 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC38A8A6NNN8 435 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 M0R233 179 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CPNE3O75131 537 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CA11O75493 328 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PPP1R3DO95685 299 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PTBP3O95758 552 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 BMP7P18075 431 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ADCYAP1P18509 176 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CSKP41240 450 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PPP2CBP62714 309 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RPS24P62847 133 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PPP2CAP67775 309 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PAN3Q58A45 887 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RPL22L1Q6P5R6 122 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MBOAT2Q6ZWT7 520 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 VRK3Q8IV63 474 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SKA3Q8IX90 412 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 OR1M1Q8NGA1 313 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 NEIL3Q8TAT5 605 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ELP5Q8TE02 316 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TBC1D17Q9HA65 648 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CLCA3PQ9Y6N3 262 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 DENND4AQ7Z401 1863 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 C9orf170A2RU37 121 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 URADA6NGE7 173 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 COLCA2A8K830 154 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 A8MUA0 341 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RBMXL2O75526 392 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TSPAN9O75954 239 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SCGNO76038 276 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 IGHV2-70P01814 119 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LPLP06858 475 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CHRM5P08912 532 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ANKRD34CP0C6C1 535 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LSM11P83369 360 aaKnown RBP eCLIP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 181.5 ms