RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NRF1Q16656 503 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 GKAP1Q5VSY0 366 aaPredicted RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 SP5Q6BEB4 398 aaPredicted RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 ABLIM2Q6H8Q1 611 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 TMPPEQ6ZT21 453 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 FCRLAQ7L513 359 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 ADGRG3Q86Y34 549 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 KIF18BQ86Y91 864 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 MCEMP1Q8IX19 187 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 OR2T12Q8NG77 320 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 DNAJA4Q8WW22 397 aaPredicted RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 C3orf49Q96BT1 292 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 LRRC37BQ96QE4 947 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 OR5B2Q96R09 309 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 ARHGDIGQ99819 225 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 ZNF559Q9BR84 538 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 SRXN1Q9BYN0 137 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 TRIM8Q9BZR9 551 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 UCK2Q9BZX2 261 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 TRIM2Q9C040 744 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 KLHL9Q9P2J3 617 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 KLHL13Q9P2N7 655 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 ABCD2Q9UBJ2 740 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 TRAPPC4Q9Y296 219 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 A0A1W2PNR3 127 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 C19orf84I3L1E1 186 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 SULT2B1O00204 365 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 AIM2O14862 343 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 EIF1BO60739 113 aaKnown RBP10.6□□□□□ -0.71
VPS52-213ENST00000461743 LGI1O95970 557 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 TFPIP10646 304 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 PNMTP11086 282 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 ENPP1P22413 925 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 CXCR1P25024 350 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 AGTR1P30556 359 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 KIR2DL2P43627 348 aaPredicted RBP10.6□□□□□ -0.71
VPS52-213ENST00000461743 CPA2P48052 419 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 KCNJ5P48544 419 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 MYBPHQ13203 477 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 PDK3Q15120 406 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 PPP4R4Q6NUP7 873 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 MEX3BQ6ZN04 569 aaKnown RBP10.6□□□□□ -0.71
VPS52-213ENST00000461743 GDF7Q7Z4P5 450 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 ATG4DQ86TL0 474 aaPredicted RBP10.6□□□□□ -0.71
VPS52-213ENST00000461743 DMRTC2Q8IXT2 367 aaPredicted RBP10.6□□□□□ -0.71
VPS52-213ENST00000461743 CADM2Q8N3J6 435 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 CNEP1R1Q8N9A8 125 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 ATP6V1C2Q8NEY4 427 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 PIGXQ8TBF5 258 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 STK35Q8TDR2 534 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 SLC26A7Q8TE54 656 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 MARVELD3Q96A59 401 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 ZNF583Q96ND8 569 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 POTEKPQ9BYX7 375 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 BCO1Q9HAY6 547 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 FANCFQ9NPI8 374 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 NDE1Q9NXR1 346 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 TMEM181Q9P2C4 612 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 RPS6KB2Q9UBS0 482 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 KCNN3Q9UGI6 736 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 BAG5Q9UL15 447 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 SLC9A8Q9Y2E8 581 aa10.6□□□□□ -0.71
VPS52-213ENST00000461743 LRBAP50851 2863 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 HRNRQ86YZ3 2850 aaPredicted RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 TMEM72A0PK05 275 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 ELOVL7A1L3X0 281 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 A8MVM7 634 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 M0QX08 132 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 SMAD9O15198 467 aaKnown RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 FRS3O43559 492 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 CYTIPO60759 359 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 FZD7O75084 574 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 PRKD3O94806 890 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 GOSR1O95249 250 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 OPN1LWP04000 364 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 FESP07332 822 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 PRG2P13727 222 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 CD247P20963 164 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 COL8A1P27658 744 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 IDUAP35475 653 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 SLC7A2P52569 658 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 AGFG1P52594 562 aaKnown RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 SLC35A1P78382 337 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 C11orf91Q3C1V1 193 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 TMEM201Q5SNT2 666 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 VWA1Q6PCB0 445 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 ULK3Q6PHR2 472 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 PLXDC2Q6UX71 529 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 SLC15A3Q8IY34 581 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 MICU2Q8IYU8 434 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 OR52E4Q8NGH9 312 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 TAMM41Q96BW9 452 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 STARD4Q96DR4 205 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 C14orf79Q96F83 325 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 RBM24Q9BX46 236 aaKnown RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 POLR2J2Q9GZM3 115 aaKnown RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 PCDHAC1Q9H158 963 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 POLR2J3Q9H1A7 115 aaKnown RBP10.59□□□□□ -0.71
VPS52-213ENST00000461743 ALG2Q9H553 416 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 TMEM27Q9HBJ8 222 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms