RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CCDC32Q9BV29 185 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 DUSP23Q9BVJ7 150 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 NUDT9Q9BW91 350 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ADGRL4Q9HBW9 690 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 TRIM36Q9NQ86 728 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 MKL2Q9ULH7 1088 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 IER3IP1Q9Y5U9 82 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 MCIDASD6RGH6 385 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 GABRPO00591 440 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 CASKO14936 926 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 TOX3O15405 576 aaPredicted RBP11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 MT-ND5P03915 603 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 MRPL3P09001 348 aaKnown RBP11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 CLUP10909 449 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 HIST1H1CP16403 213 aaKnown RBP11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 CAPZA2P47755 286 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 TGM4P49221 684 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 DEFA1P59665 94 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 DEFA3P59666 94 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 TMEM71Q6P5X7 295 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 MARCH9Q86YJ5 346 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 GPALPP1Q8IXQ4 340 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 PRSS58Q8IYP2 241 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 LRRC17Q8N6Y2 441 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 ARIH2OSQ8N7S6 290 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 OR4K13Q8NH42 304 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 SMPDL3BQ92485 455 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 TMEM43Q9BTV4 400 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 KATNB1Q9BVA0 655 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 HDHD5Q9BXW7 423 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC7A5P2Q9GIP4 190 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 PLEKHB1Q9UF11 243 aaPredicted RBP11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 SRPK3Q9UPE1 567 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 TRAPPC4Q9Y296 219 aa11.84□□□□□ -0.51
SPTLC1-201ENST00000262554 ASXL3Q9C0F0 2248 aa11.83□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC35F4A4IF30 521 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 OIP5O43482 229 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 RNF13O43567 381 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 PTTG1O95997 202 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 IGF2P01344 180 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 PNLIPP16233 465 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 GRK6P43250 576 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 PRPS1P60891 318 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 CSTF1Q05048 431 aaKnown RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 CDC20Q12834 499 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 EBPQ15125 230 aaKnown RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 TSSK4Q6SA08 328 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 APOOLQ6UXV4 268 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 Q7L0L9 218 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 SLC29A4Q7RTT9 530 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 ATG4DQ86TL0 474 aaPredicted RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LAX1Q8IWV1 398 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 C9orf40Q8IXQ3 194 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 PRR22Q8IZ63 422 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 SYT14Q8NB59 555 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 SDR9C7Q8NEX9 313 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 ASB15Q8WXK1 588 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 VN1R1Q9GZP7 353 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LAT2Q9GZY6 243 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 CPNE5Q9HCH3 593 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 POLHQ9Y253 713 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 RP1P56715 2156 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 CCDC163A0A0D9SF12 145 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 OR6C76A6NM76 312 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LRRN3E7EW58 273 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 TO15178 435 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 IDH3BO43837 385 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 ICOSLGO75144 302 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 RGS9O75916 674 aaPredicted RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 GYPBP06028 91 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 EPHA8P29322 1005 aaPredicted RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 SLC6A8P48029 635 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 NR0B1P51843 470 aaKnown RBP11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 EFNA3P52797 238 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 TAS2R43P59537 309 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LGALS3BPQ08380 585 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 NR0B2Q15466 257 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 DDI2Q5TDH0 399 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LCN1P1Q5VSP4 162 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 VASNQ6EMK4 673 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 CBLN3Q6UW01 205 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 C10orf53Q8N6V4 93 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 OR1N1Q8NGS0 311 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 ZNF563Q8TA94 476 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 NEIL3Q8TAT5 605 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 TIMP4Q99727 224 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 NRSN2Q9GZP1 204 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 WWTR1Q9GZV5 400 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 KCNN2Q9H2S1 579 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 LRRN3Q9H3W5 708 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 FBXL4Q9UKA2 621 aa11.83□□□□□ -0.52
SPTLC1-201ENST00000262554 FER1L5A0AVI2 2057 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 ARID1BQ8NFD5 2236 aaPredicted RBP11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 IGKV1D-42A0A075B6H8 117 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 A0A1W2PQL4 384 aaPredicted RBP11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 CPED1A4D0V7 1026 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 CD8B2A6NJW9 211 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 ARPC3O15145 178 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 CD8BP10966 210 aa11.82□□□□□ -0.52
SPTLC1-201ENST00000262554 CD53P19397 219 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms