RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CAMK2BQ13554 666 aa20.65■□□□□ 0.9
CDX1-201ENST00000231656 SMARCD3Q6STE5 483 aa20.65■□□□□ 0.9
CDX1-201ENST00000231656 LNX2Q8N448 690 aa20.65■□□□□ 0.9
CDX1-201ENST00000231656 RFKQ969G6 155 aa20.65■□□□□ 0.9
CDX1-201ENST00000231656 ZHX1-C8orf76Q96EF9 292 aa20.65■□□□□ 0.9
CDX1-201ENST00000231656 HINT3Q9NQE9 182 aaKnown RBP20.65■□□□□ 0.9
CDX1-201ENST00000231656 MRTO4Q9UKD2 239 aaKnown RBP20.65■□□□□ 0.9
CDX1-201ENST00000231656 TO15178 435 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 HCN1O60741 890 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 DXOO77932 396 aaKnown RBP20.64■□□□□ 0.9
CDX1-201ENST00000231656 DGUOKQ16854 277 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 BTBD16Q32M84 506 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 NXNL2Q5VZ03 156 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 APOOLQ6UXV4 268 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 NDUFAF7Q7L592 441 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 IL22RA1Q8N6P7 574 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 OR8K3Q8NH51 312 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 NUBPLQ8TB37 319 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 DCSTAMPQ9H295 470 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 ZBTB20Q9HC78 741 aaPredicted RBP20.64■□□□□ 0.9
CDX1-201ENST00000231656 CARD8Q9Y2G2 431 aa20.64■□□□□ 0.9
CDX1-201ENST00000231656 SCDO00767 359 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 MYL12BO14950 172 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 NADKO95544 446 aaPredicted RBP20.64■□□□□ 0.89
CDX1-201ENST00000231656 UBL4AP11441 157 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 SDHBP21912 280 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 LCN1P31025 176 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 BMXP51813 675 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 SKP2Q13309 424 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 FHL1Q13642 323 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 GATSQ8NAP1 163 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 BBS1Q8NFJ9 593 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 ELP5Q8TE02 316 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 THAP3Q8WTV1 239 aaPredicted RBP20.64■□□□□ 0.89
CDX1-201ENST00000231656 DNAJA4Q8WW22 397 aaPredicted RBP20.64■□□□□ 0.89
CDX1-201ENST00000231656 NACC2Q96BF6 587 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 HSPBAP1Q96EW2 488 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 EXOSC3Q9NQT5 275 aaKnown RBP20.64■□□□□ 0.89
CDX1-201ENST00000231656 ICAM5Q9UMF0 924 aa20.64■□□□□ 0.89
CDX1-201ENST00000231656 MRPS18BQ9Y676 258 aaKnown RBP20.64■□□□□ 0.89
CDX1-201ENST00000231656 TRAV27A0A087WT01 109 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 A0A087WUJ7 227 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 APOL3O95236 402 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 ENDOUP21128 410 aaKnown RBP20.63■□□□□ 0.89
CDX1-201ENST00000231656 HTR1FP30939 366 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 CRYZQ08257 329 aaKnown RBP20.63■□□□□ 0.89
CDX1-201ENST00000231656 EXT1Q16394 746 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 ZNF829Q3KNS6 432 aaPredicted RBP20.63■□□□□ 0.89
CDX1-201ENST00000231656 LINC00299Q6ZSB3 139 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 CXXC5Q7LFL8 322 aaKnown RBP20.63■□□□□ 0.89
CDX1-201ENST00000231656 CPOQ8IVL8 374 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 PRR22Q8IZ63 422 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 TP53INP1Q96A56 240 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 C3orf49Q96BT1 292 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 ADOQ96SZ5 270 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 SLIRPQ9GZT3 109 aaKnown RBP20.63■□□□□ 0.89
CDX1-201ENST00000231656 FN3KQ9H479 309 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 OCEL1Q9H607 264 aa20.63■□□□□ 0.89
CDX1-201ENST00000231656 NSG1A0A0A6YYJ2 146 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TMEM200CA6NKL6 621 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TSPAN2O60636 221 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 COPZ1P61923 177 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TUBA1BP68363 451 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 MLLT11Q13015 90 aaPredicted RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 IL10RAQ13651 578 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 RTP5Q14D33 572 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 SOWAHCQ53LP3 525 aaPredicted RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 USP43Q70EL4 1123 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TUBA1AQ71U36 451 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 OR51A7Q8NH64 312 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 CHCHD6Q9BRQ6 235 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 CENPOQ9BU64 300 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 MCCC2Q9HCC0 563 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 ZNF160Q9HCG1 818 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 IL17BQ9UHF5 180 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 EXOGQ9Y2C4 368 aaKnown RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 LOC100506127A0A0U1RQW1 187 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 A0A1B0GVG6 124 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TMEM129A0AVI4 362 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 ZFAND5O76080 213 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 HPGDP15428 266 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 MYL12AP19105 171 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 ABCD3P28288 659 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 OPRL1P41146 370 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 SOX3P41225 446 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 C1DQ13901 141 aaKnown RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 TGIF1Q15583 401 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 DESI1Q6ICB0 168 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 C16orf47Q6ZP98 133 aaPredicted RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 OAFQ86UD1 273 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 SLC43A2Q8N370 569 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 OR5L2Q8NGL0 311 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 M1APQ8TC57 530 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 PHOSPHO1Q8TCT1 267 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 TNFRSF13CQ96RJ3 184 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 SH3GL3Q99963 347 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 IFT27Q9BW83 186 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 CMC2Q9NRP2 79 aa20.62■□□□□ 0.89
CDX1-201ENST00000231656 EXOSC1Q9Y3B2 195 aaKnown RBP20.62■□□□□ 0.89
CDX1-201ENST00000231656 PCSK5Q92824 1860 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms