RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KIAA0907Q7Z7F0 614 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 KDM8Q8N371 416 aa8□□□□□ -1.13
USP40-203ENST00000427112 GALNT11Q8NCW6 608 aa8□□□□□ -1.13
USP40-203ENST00000427112 OSTF1Q92882 214 aa8□□□□□ -1.13
USP40-203ENST00000427112 HSPA12BQ96MM6 686 aa8□□□□□ -1.13
USP40-203ENST00000427112 NDC1Q9BTX1 674 aa8□□□□□ -1.13
USP40-203ENST00000427112 SPATA5L1Q9BVQ7 753 aa8□□□□□ -1.13
USP40-203ENST00000427112 NRSN2Q9GZP1 204 aa8□□□□□ -1.13
USP40-203ENST00000427112 ASB6Q9NWX5 421 aa8□□□□□ -1.13
USP40-203ENST00000427112 CLDND1Q9NY35 253 aa8□□□□□ -1.13
USP40-203ENST00000427112 LIPT1Q9Y234 373 aa8□□□□□ -1.13
USP40-203ENST00000427112 TRAPPC4Q9Y296 219 aa8□□□□□ -1.13
USP40-203ENST00000427112 COL6A3P12111 3177 aa8□□□□□ -1.13
USP40-203ENST00000427112 CACNA1EQ15878 2313 aa8□□□□□ -1.13
USP40-203ENST00000427112 RIIAD1A6NNX1 92 aa8□□□□□ -1.13
USP40-203ENST00000427112 CACNB4O00305 520 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 ARPC5O15511 151 aa8□□□□□ -1.13
USP40-203ENST00000427112 KAT7O95251 611 aa8□□□□□ -1.13
USP40-203ENST00000427112 NUDT14O95848 222 aa8□□□□□ -1.13
USP40-203ENST00000427112 IFNA16P05015 189 aa8□□□□□ -1.13
USP40-203ENST00000427112 HIST1H1CP16403 213 aaKnown RBP8□□□□□ -1.13
USP40-203ENST00000427112 RAB3BP20337 219 aa8□□□□□ -1.13
USP40-203ENST00000427112 GDI1P31150 447 aa8□□□□□ -1.13
USP40-203ENST00000427112 VEGFBP49765 207 aa8□□□□□ -1.13
USP40-203ENST00000427112 AKR1C2P52895 323 aa8□□□□□ -1.13
USP40-203ENST00000427112 GUCA2AQ02747 115 aa8□□□□□ -1.13
USP40-203ENST00000427112 AKR1C1Q04828 323 aa8□□□□□ -1.13
USP40-203ENST00000427112 LRRC69Q6ZNQ3 347 aa8□□□□□ -1.13
USP40-203ENST00000427112 RNF165Q6ZSG1 346 aa8□□□□□ -1.13
USP40-203ENST00000427112 OR10AC1Q8NH08 325 aa8□□□□□ -1.13
USP40-203ENST00000427112 C1orf216Q8TAB5 229 aa8□□□□□ -1.13
USP40-203ENST00000427112 SETD6Q8TBK2 473 aa8□□□□□ -1.13
USP40-203ENST00000427112 HHIPL1Q96JK4 782 aa8□□□□□ -1.13
USP40-203ENST00000427112 KLHDC3Q9BQ90 382 aa8□□□□□ -1.13
USP40-203ENST00000427112 NOX4Q9NPH5 578 aa8□□□□□ -1.13
USP40-203ENST00000427112 TRIM36Q9NQ86 728 aa8□□□□□ -1.13
USP40-203ENST00000427112 MARK1Q9P0L2 795 aa8□□□□□ -1.13
USP40-203ENST00000427112 KIF26BQ2KJY2 2108 aa8□□□□□ -1.13
USP40-203ENST00000427112 FRMPD3Q5JV73 1810 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 COL4A4P53420 1690 aaPredicted RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 EDDM13A0A1B0GTR0 161 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 TRDV1A0A1B0GX56 115 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 LEUTXA8MZ59 168 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 FKTNO75072 461 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 APOC3P02656 99 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 CST6Q15828 149 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 PRAMEF17Q5VTA0 474 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 SHISA6Q6ZSJ9 500 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 SLC35D2Q76EJ3 337 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 TMED4Q7Z7H5 227 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 RAB42Q8N4Z0 105 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 RELL2Q8NC24 303 aaPredicted RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 ZNF680Q8NEM1 530 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 OR9A4Q8NGU2 314 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 OR52I2Q8NH67 350 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 SETD7Q8WTS6 366 aaKnown RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 ELMOD3Q96FG2 381 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 SPACA7Q96KW9 195 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 PLA2G2FQ9BZM2 168 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 SLA2Q9H6Q3 261 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 DIABLOQ9NR28 239 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP40-203ENST00000427112 DTX4Q9Y2E6 619 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 STON1Q9Y6Q2 735 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 C2orf72A6NCS6 295 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 C1QTNF3-AMACRE9PGA6 284 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 LILRB3O75022 631 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 EFCAB14O75071 495 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 HK1P19367 917 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 PXNP49023 591 aaPredicted RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 CLDN20P56880 219 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 EXOSC2Q13868 293 aaKnown RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 SF3A2Q15428 464 aaKnown RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 SLC48A1Q6P1K1 146 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 APOOLQ6UXV4 268 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 LINC00299Q6ZSB3 139 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 IKBIPQ70UQ0 350 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 FGD2Q7Z6J4 655 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 YAF2Q8IY57 180 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 CDK20Q8IZL9 346 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 C9orf62Q8N4C0 152 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 OR2L5Q8NG80 312 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 RASSF5Q8WWW0 418 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 ZNF707Q96C28 371 aaPredicted RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 OR1F2PQ96R84 312 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 CCDC3Q9BQI4 270 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 DPEP2Q9H4A9 486 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 MCCC2Q9HCC0 563 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 MEPEQ9NQ76 525 aaPredicted RBP7.99□□□□□ -1.13
USP40-203ENST00000427112 MGAT4CQ9UBM8 478 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 ZMIZ1Q9ULJ6 1067 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 OR10H1Q9Y4A9 318 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 FREM3P0C091 2139 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 FAM86C2PA6NEL3 165 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 FAM25EA8MYX2 175 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 MCIDASD6RGH6 385 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 E9PQ18 207 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 NGFRP08138 427 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 H2AFB2P0C5Z0 115 aa7.99□□□□□ -1.13
USP40-203ENST00000427112 HOXB6P17509 224 aaKnown RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms