RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 NXF2Q9GZY0 626 aaKnown RBP9.54□□□□□ -0.88
VPS25-203ENST00000589520 NXF5Q9H1B4 397 aaKnown RBP9.54□□□□□ -0.88
VPS25-203ENST00000589520 SLC26A1Q9H2B4 701 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 MEPEQ9NQ76 525 aaPredicted RBP9.54□□□□□ -0.88
VPS25-203ENST00000589520 C20orf141Q9NUB4 165 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 NDUFB11Q9NX14 153 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 TNFRSF10DQ9UBN6 386 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 SSR3Q9UNL2 185 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 SLC6A5Q9Y345 797 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 PCDHGB7Q9Y5F8 929 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 PEX16Q9Y5Y5 336 aa9.54□□□□□ -0.88
VPS25-203ENST00000589520 MYO15AQ9UKN7 3530 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 A0A075B6Q4 140 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 OR2W5A6NFC9 320 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 OR6C70A6NIJ9 312 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ELOA3DA6NLF2 546 aaPredicted RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 VSTM2BA6NLU5 285 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 TAF4O00268 1085 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ARPC3O15145 178 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 AKAP8O43823 692 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 GFRA3O60609 400 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 TSPAN2O60636 221 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ALOX12BO75342 701 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 CFIP05156 583 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 GP1BAP07359 652 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 CD63P08962 238 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 TSPAN19P0C672 248 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 APEHP13798 732 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 CD53P19397 219 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 FUT1P19526 365 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 PGCP20142 388 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 GALP22466 123 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 NR4A1P22736 598 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 NOS3P29474 1203 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 S100A5P33763 92 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 SLC1A3P43003 542 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 GRK6P43250 576 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 LSM3P62310 102 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 SKP2Q13309 424 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ELOA3BQ3SY89 546 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 C1orf189Q5VU69 101 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 C16orf87Q6PH81 154 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 KIRREL2Q6UWL6 708 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 C5orf46Q6UWT4 87 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 COX15Q7KZN9 410 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 CPOQ8IVL8 374 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 MAML2Q8IZL2 1156 aaPredicted RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 EID2Q8N6I1 236 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ZNF441Q8N8Z8 693 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 GALNT6Q8NCL4 622 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 ELOA3Q8NG57 546 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 MCFD2Q8NI22 146 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 UFD1Q92890 307 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 C3orf49Q96BT1 292 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 EFHD2Q96C19 240 aaPredicted RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 CLIP3Q96DZ5 547 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 MRPL48Q96GC5 212 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 LOXL4Q96JB6 756 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 OR6C1Q96RD1 312 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 TNFRSF13CQ96RJ3 184 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 GFM1Q96RP9 751 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 ARHGAP9Q9BRR9 750 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 SLIRPQ9GZT3 109 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 ATP13A2Q9NQ11 1180 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 HINT3Q9NQE9 182 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 CRNNQ9UBG3 495 aaPredicted RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 CLEC2DQ9UHP7 191 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 NXT1Q9UKK6 140 aaKnown RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 GSTK1Q9Y2Q3 226 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 CAB39Q9Y376 341 aaPredicted RBP9.53□□□□□ -0.88
VPS25-203ENST00000589520 PCDHGB2Q9Y5G2 931 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 THADAQ6YHU6 1953 aa9.53□□□□□ -0.88
VPS25-203ENST00000589520 PNMA8CA0A1B0GUJ8 204 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 METTL15A6NJ78 407 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 SAGE2PA6NJ88 616 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 NTN3O00634 580 aaPredicted RBP9.52□□□□□ -0.89
VPS25-203ENST00000589520 SLC30A4O14863 429 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 NDUFB5O43674 189 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 CDC40O60508 579 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS25-203ENST00000589520 OR7A10O76100 309 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 CH25HO95992 272 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 MYF5P13349 255 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 CD40LGP29965 261 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 ETV5P41161 510 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 HTR3AP46098 478 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 ETV1P50549 477 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 RNF144AP50876 292 aaPredicted RBP9.52□□□□□ -0.89
VPS25-203ENST00000589520 NR0B1P51843 470 aaKnown RBP9.52□□□□□ -0.89
VPS25-203ENST00000589520 EMP2P54851 167 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 FXYD6P3P58550 94 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 SLC26A5P58743 744 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 ACTC1P68032 377 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 ACTA1P68133 377 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 ZNF45Q02386 682 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 PLCXD2Q0VAA5 305 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 SRSF5Q13243 272 aaKnown RBP9.52□□□□□ -0.89
VPS25-203ENST00000589520 ITGADQ13349 1161 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 IL10RAQ13651 578 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 SSX1Q16384 188 aa9.52□□□□□ -0.89
VPS25-203ENST00000589520 SLC35D3Q5M8T2 416 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms