RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 SDHAF3Q9NRP4 125 aa12.61□□□□□ -0.39
TPM1-215ENST00000558868 TCFL5Q9UL49 500 aa12.61□□□□□ -0.39
TPM1-215ENST00000558868 BAIAP2Q9UQB8 552 aa12.61□□□□□ -0.39
TPM1-215ENST00000558868 RPL36Q9Y3U8 105 aaKnown RBP12.61□□□□□ -0.39
TPM1-215ENST00000558868 HS3ST3B1Q9Y662 390 aa12.61□□□□□ -0.39
TPM1-215ENST00000558868 IRGMA1A4Y4 181 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 CCDC160A6NGH7 325 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 C21orf140B9A014 251 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 C9orf172C9J069 976 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 PROB1E7EW31 1015 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 KPNA4O00629 521 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 CDC40O60508 579 aaKnown RBP eCLIP12.6□□□□□ -0.39
TPM1-215ENST00000558868 NTN1O95631 604 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 FBXO45P0C2W1 286 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 SAGP10523 405 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 COX6A1P12074 109 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 PIPP12273 146 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 GP1BBP13224 206 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 MAKP20794 623 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 TGM1P22735 817 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 ITPKBP27987 946 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 GRK5P34947 590 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 CRYZQ08257 329 aaKnown RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 NEDD8Q15843 81 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 SMN1Q16637 294 aaKnown RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 PGGHGQ32M88 737 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 ACSM5Q6NUN0 579 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 SMARCD3Q6STE5 483 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 AHSA2Q719I0 299 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 ATG4DQ86TL0 474 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 MEX3DQ86XN8 651 aaKnown RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 IQCF1Q8N6M8 205 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 TCEANCQ8N8B7 351 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 B4GALNT2Q8NHY0 566 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 C9orf43Q8TAL5 461 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 TMEM163Q8TC26 289 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 THAP3Q8WTV1 239 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 FCGR1BQ92637 280 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 ARSGQ96EG1 525 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 IL4I1Q96RQ9 567 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 GPR87Q9BY21 358 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 NDEL1Q9GZM8 345 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 LIN28AQ9H9Z2 209 aaKnown RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 FKBP14Q9NWM8 211 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 PAK1IP1Q9NWT1 392 aaPredicted RBP12.6□□□□□ -0.39
TPM1-215ENST00000558868 ERVK-18Q9QC07 812 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 AASSQ9UDR5 926 aa12.6□□□□□ -0.39
TPM1-215ENST00000558868 TMEM200CA6NKL6 621 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 ENO4A6NNW6 628 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 SOCS6O14544 535 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 CDC42EP2O14613 210 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 TP53I11O14683 189 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 OIP5O43482 229 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 TLX2O43763 284 aaPredicted RBP12.59□□□□□ -0.39
TPM1-215ENST00000558868 SCO2O43819 266 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 CDK1P06493 297 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 HTR1AP08908 422 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 MSX1P28360 303 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 HTR3AP46098 478 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 FBXW4P57775 412 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 FOXB2Q5VYV0 432 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 OPN5Q6U736 354 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 CBLN3Q6UW01 205 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 RTL4Q6ZR62 310 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 TIPARPQ7Z3E1 657 aaKnown RBP12.59□□□□□ -0.39
TPM1-215ENST00000558868 OAFQ86UD1 273 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 STX19Q8N4C7 294 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 OR11G2Q8NGC1 345 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 OR8D4Q8NGM9 314 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 TMEM234Q8WY98 164 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 RORBQ92753 470 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 GGHQ92820 318 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 SH3YL1Q96HL8 342 aaPredicted RBP12.59□□□□□ -0.39
TPM1-215ENST00000558868 SAMD8Q96LT4 415 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 MESP1Q9BRJ9 268 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 PLA2G12AQ9BZM1 189 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 ADAM19Q9H013 955 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 OR52D1Q9H346 318 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 ATP13A2Q9NQ11 1180 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 MEPEQ9NQ76 525 aaPredicted RBP12.59□□□□□ -0.39
TPM1-215ENST00000558868 C20orf141Q9NUB4 165 aa12.59□□□□□ -0.39
TPM1-215ENST00000558868 YARS2Q9Y2Z4 477 aaKnown RBP12.59□□□□□ -0.39
TPM1-215ENST00000558868 ZNF701M0R085 212 aaPredicted RBP12.58□□□□□ -0.4
TPM1-215ENST00000558868 PRKYO43930 277 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 NOL3O60936 208 aaKnown RBP12.58□□□□□ -0.4
TPM1-215ENST00000558868 ENTPD6O75354 484 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 PTP4A3O75365 173 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 OR2J2O76002 312 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 OR7A10O76100 309 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 DKK1O94907 266 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 NUDT14O95848 222 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 HPP00738 406 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 MT-ND2P03891 347 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 CXCR1P25024 350 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 SLC6A6P31641 620 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 LIMK1P53667 647 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 EFNB1P98172 346 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 PMS2P3Q13401 168 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 RAB39AQ14964 217 aa12.58□□□□□ -0.4
TPM1-215ENST00000558868 NTRK2Q16620 822 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms