RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 H7C417 338 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 DVL2O14641 736 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LILRB3O75022 631 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LDB3O75112 727 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 KLK3P07288 261 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 FAM157CP0CG43 387 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PGDP52209 483 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 STXBP1P61764 594 aaKnown RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF85Q03923 595 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 GINS1Q14691 196 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CDK5R1Q15078 307 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PEG10Q86TG7 708 aaKnown RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TDHQ8IZJ6 230 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OR8H3Q8N146 312 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TRAM1L1Q8N609 369 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OR4Q3Q8NH05 313 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ADAMTS18Q8TE60 1221 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CYB5D2Q8WUJ1 264 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 RGP1Q92546 391 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LRR1Q96L50 414 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 DMRTB1Q96MA1 342 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MTFP1Q9UDX5 166 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 IL36AQ9UHA7 158 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 WWP2O00308 870 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SUSD5O60279 629 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 DNASE1P24855 282 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 DDX6P26196 483 aaKnown RBP eCLIP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SOX3P41225 446 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PITPNBP48739 271 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CCR8P51685 355 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SMSP52788 366 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OC90Q02509 493 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 HLXQ14774 488 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OPCMLQ14982 345 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ETFDHQ16134 617 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ST3GAL2Q16842 350 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LINC01590Q5TEZ4 76 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 RPL13AP3Q6NVV1 102 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF529Q6P280 563 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 UBE2Q1Q7Z7E8 422 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SMAP2Q8WU79 429 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 THAP4Q8WY91 577 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 COQ10AQ96MF6 247 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 GFM1Q96RP9 751 aaKnown RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 IFT27Q9BW83 186 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PNO1Q9NRX1 252 aaKnown RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TAAR2Q9P1P5 351 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MALT1Q9UDY8 824 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 BAIAP2Q9UQB8 552 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM5Q9Y2B1 443 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 UNC119BA6NIH7 251 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OR2AG2A6NM03 316 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CXCL10P02778 98 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ANXA4P09525 319 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 HKR1P10072 659 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ETFAP13804 333 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF10P21506 573 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 RFC3P40938 356 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SPINT3P49223 89 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 POLR2GP62487 172 aaKnown RBP eCLIP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 IRF8Q02556 426 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 FAM214AQ32MH5 1076 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 METTL11BQ5VVY1 283 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 GRHL3Q8TE85 626 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 HMGB4Q8WW32 186 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 OR8D1Q8WZ84 308 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CTHRC1Q96CG8 243 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF514Q96K75 400 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ART5Q96L15 291 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LINC00052Q96N35 136 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PINK1Q9BXM7 581 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 UBQLN3Q9H347 655 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ASF1AQ9Y294 204 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 POMT1Q9Y6A1 747 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ETV2O00321 342 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CTNSO60931 367 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ECDO95905 644 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ITPKBP27987 946 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 NDUFS1P28331 727 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MAT2AP31153 395 aaKnown RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 AVPR1BP47901 424 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 REEP5Q00765 189 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ENPP2Q13822 863 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ACSF3Q4G176 576 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 FRRS1Q6ZNA5 592 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 STX12Q86Y82 276 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 GPR148Q8TDV2 347 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SLC9A6Q92581 669 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MCHR2Q969V1 340 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 VWCEQ96DN2 955 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SCARF2Q96GP6 870 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CITED4Q96RK1 184 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF607Q96SK3 696 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 WDR26Q9H7D7 661 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MVB12BQ9H7P6 319 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 LOC390937A0A1W2PQ73 354 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 NPIPB15A6NHN6 443 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SHISA7A6NL88 538 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF432O94892 652 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 FHP07954 510 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms