RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SNCBQ16143 134 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 ADRM1Q16186 407 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 FBXL19-AS1Q494R0 122 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 ZNF311Q5JNZ3 666 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 INTS11Q5TA45 600 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 ERICH5Q6P6B1 374 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 DHRS4L2Q6PKH6 230 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 C6orf89Q6UWU4 347 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 PLEKHM3Q6ZWE6 761 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 CCDC71Q8IV32 467 aaPredicted RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 LILRA2Q8N149 483 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 C10orf111Q8N326 155 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 ACBD4Q8NC06 268 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 NAXEQ8NCW5 288 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 OR10D3Q8NH80 312 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 CNOT9Q92600 299 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 CPNE4Q96A23 557 aaPredicted RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 ELAC2Q9BQ52 826 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 KLHDC3Q9BQ90 382 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 CCDC106Q9BWC9 280 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 PINK1Q9BXM7 581 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 MYLK2Q9H1R3 596 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 PIGMQ9H3S5 423 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 RNF122Q9H9V4 155 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 GLRX2Q9NS18 164 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 CHRNA9Q9UGM1 479 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 CLDN24A6NM45 220 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 FAM90A27PA6NNH2 459 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 KDM4EB2RXH2 506 aaPredicted RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 DNPH1O43598 174 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 BCAS1O75363 584 aaPredicted RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 SYNGR4O95473 234 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 FAM107AO95990 144 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 COX4I1P13073 169 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 IGFBP2P18065 325 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 SLC7A1P30825 629 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 SLC1A3P43003 542 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 PCYT1AP49585 367 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 POLR2HP52434 150 aaKnown RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 COPZ1P61923 177 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 MERTKQ12866 999 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 SF3A3Q12874 501 aaKnown RBP eCLIP10.65□□□□□ -0.71e-6■■□□□ 13.6
VPS52-213ENST00000461743 PON3Q15166 354 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 CDSNQ15517 529 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 SGCBQ16585 318 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 ZNF239Q16600 458 aaKnown RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 SYT14P1Q58G82 188 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 HBMQ6B0K9 141 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 NANOGP8Q6NSW7 305 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 HACD2Q6Y1H2 254 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 CCDC121Q6ZUS5 278 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 PATL1Q86TB9 770 aaKnown RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 MTDHQ86UE4 582 aaKnown RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 VRK2Q86Y07 508 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 PTOV1Q86YD1 416 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 RASSF5Q8WWW0 418 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 CMTM5Q96DZ9 223 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 REXO5Q96IC2 774 aaKnown RBP10.65□□□□□ -0.7
VPS52-213ENST00000461743 NPAS1Q99742 590 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 SPOCK3Q9BQ16 436 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 COQ10BQ9H8M1 238 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 NANOGQ9H9S0 305 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 GP6Q9HCN6 339 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 ARMCX1Q9P291 453 aa10.65□□□□□ -0.7
VPS52-213ENST00000461743 CACNA1DQ01668 2161 aa10.65□□□□□ -0.71
VPS52-213ENST00000461743 FREM1Q5H8C1 2179 aa10.65□□□□□ -0.71
VPS52-213ENST00000461743 A0A0J9YW62 118 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 FAM220BPB1ANY3 271 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 H0YC42 278 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 TNFSF11O14788 317 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ZNF208O43345 1280 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 HNRNPRO43390 633 aaKnown RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 DCTN3O75935 186 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 TGM6O95932 706 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 BMP5P22003 454 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 RYKP34925 604 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 SFTPDP35247 375 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 IDH2P48735 452 aaKnown RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 TPD52P55327 224 aaPredicted RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 RAC3P60763 192 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 CSNK2A1P68400 391 aaPredicted RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 SELPLGQ14242 412 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 CAPRIN1Q14444 709 aaKnown RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 RNPS1Q15287 305 aaKnown RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 GUSBP1Q15486 140 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 VMACQ2NL98 169 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 FAM91A1Q658Y4 838 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 GTF2IRD2BQ6EKJ0 949 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 WBP2NLQ6ICG8 309 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 POMZP3Q6PJE2 187 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 HMGN2P46Q86SG4 172 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 GTF2IRD2Q86UP8 949 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 CALHM3Q86XJ0 350 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ARMC8Q8IUR7 673 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ZZZ3Q8IYH5 903 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 RELL2Q8NC24 303 aaPredicted RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 OR10A6Q8NH74 314 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 FNDC9Q8TBE3 224 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 RNF128Q8TEB7 428 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 RCN3Q96D15 328 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms