RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TGFBR3Q03167 851 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 MERTKQ12866 999 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SKP2Q13309 424 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 PPA1Q15181 289 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 NRF1Q16656 503 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ZSWIM7Q19AV6 140 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SYT14P1Q58G82 188 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS41-208ENST00000448833 PDZK1Q5T2W1 519 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 HEPHL1Q6MZM0 1159 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 TMEM108Q6UXF1 575 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 TMPPEQ6ZT21 453 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 C22orf34Q6ZV56 151 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 NUFIP2Q7Z417 695 aaKnown RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 GRINAQ7Z429 371 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SPATA19Q7Z5L4 167 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 MTDHQ86UE4 582 aaKnown RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 UBE2J2Q8N2K1 259 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 MREGQ8N565 214 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ARFGAP2Q8N6H7 521 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 KRTCAP2Q8N6L1 136 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 OR5D16Q8NGK9 328 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 OR5AK3PQ8NH89 298 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 OR2W6PQ8NHA6 318 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ZNF563Q8TA94 476 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 PIGXQ8TBF5 258 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SMAP2Q8WU79 429 aaPredicted RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 XAGE5Q8WWM1 108 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 IGFBPL1Q8WX77 278 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ROPN1LQ96C74 230 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ZBTB18Q99592 522 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SMR3AQ99954 134 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 PSD2Q9BQI7 771 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 NAA11Q9BSU3 229 aaPredicted RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 SRXN1Q9BYN0 137 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ZNF350Q9GZX5 532 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SAP130Q9H0E3 1048 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 OR51I1Q9H343 314 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 AKTIPQ9H8T0 292 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ANKZF1Q9H8Y5 726 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 MTHFD2LQ9H903 347 aaPredicted RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 MKLN1Q9UL63 735 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 LAMP3Q9UQV4 416 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 ZANQ9Y493 2812 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 HIVEP2P31629 2446 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 IGKV3D-15A0A087WSY6 115 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 A0A1W2PNR3 127 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CIB4A0PJX0 185 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 TRPC5OSA6NMA1 111 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ESPNB1AK53 854 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ZNF814B7Z6K7 855 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 SLCO1B7G3V0H7 640 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 OVOL3O00110 214 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 SMAD7O15105 426 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 CLOCKO15516 846 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 FCMRO60667 390 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 MRPL33O75394 65 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 UGT2B17O75795 530 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 PGM3O95394 542 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 UBTFL6P0CB48 400 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 TFPIP10646 304 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 PTAFRP25105 342 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 SLC1A6P48664 564 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 VSNL1P62760 191 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 SLC35A1P78382 337 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 STX3Q13277 289 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CASP8Q14790 479 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 TAB1Q15750 504 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CHI3L2Q15782 390 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 TOMM34Q15785 309 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 PDCD2Q16342 344 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 GSTA3Q16772 222 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CLEC12BQ2HXU8 276 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 KRT71Q3SY84 523 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ZNF672Q499Z4 452 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 GPAT3Q53EU6 434 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 AGAP6Q5VW22 663 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 FBXW9Q5XUX1 488 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 OR4F3Q6IEY1 312 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ALKBH2Q6NS38 261 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 Q71RC1 249 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 ZNF440Q8IYI8 595 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ZNF619Q8N2I2 560 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 GLB1L3Q8NCI6 653 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 AENQ8WTP8 325 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 APH1AQ96BI3 265 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 DDIT4LQ96D03 193 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 NEURL3Q96EH8 262 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ADAD1Q96M93 576 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 HS6ST2Q96MM7 605 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 TRNT1Q96Q11 434 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 NPAS1Q99742 590 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 PIF1Q9H611 641 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 ARMC7Q9H6L4 198 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 COQ10BQ9H8M1 238 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CACYBPQ9HB71 228 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 MOV10Q9HCE1 1003 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 ASB6Q9NWX5 421 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 THUMPD1Q9NXG2 353 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 CISD1Q9NZ45 108 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms