RNA–Protein interactions for RNA: ENST00000441799.1

HMGB3P9-201, Transcript of high mobility group box 3 pseudogene 9, humanhuman

BASIC

Gene HMGB3P9, Length 583 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P9-201ENST00000441799 SLC35C1Q96A29 364 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 RGMAQ96B86 450 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 C12orf43Q96C57 262 aaKnown RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 NXNL1Q96CM4 212 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 MED8Q96G25 268 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 RNF170Q96K19 258 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF347Q96SE7 839 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 CNN2Q99439 309 aaKnown RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 NPAS2Q99743 824 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 EGFL8Q99944 293 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 C1orf50Q9BV19 199 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 KATNB1Q9BVA0 655 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 NXF2Q9GZY0 626 aaKnown RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 COMMD4Q9H0A8 199 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 PORCNQ9H237 461 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ELOVL6Q9H5J4 265 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 EPHX3Q9H6B9 360 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 BCO1Q9HAY6 547 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 HMG20AQ9NP66 347 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 CUTCQ9NTM9 273 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 MCUBQ9NWR8 336 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 DDIT4Q9NX09 232 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 CNOT2Q9NZN8 540 aaKnown RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 DNMT3BQ9UBC3 853 aaKnown RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 UBQLN2Q9UHD9 624 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF639Q9UID6 485 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF490Q9ULM2 529 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 DAPP1Q9UN19 280 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 GSTK1Q9Y2Q3 226 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ARL5AQ9Y689 179 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 SF3B1O75533 1304 aaKnown RBP eCLIP4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 EMSYQ7Z589 1322 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 ADGRA2Q96PE1 1338 aa4.36□□□□□ -1.71
HMGB3P9-201ENST00000441799 N4BP2Q86UW6 1770 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 LOC102723996A0A087X1L8 192 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 UBA6A0AVT1 1052 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SAC3D1A6NKF1 404 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZAR1LA6NP61 321 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 C9J4A7 227 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 C9JVG2 144 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 DNASE2O00115 360 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 LEFTY2O00292 366 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 PDXKO00764 312 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF749O43361 778 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 OR10H2O60403 315 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SNAP91O60641 907 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 GGCTO75223 188 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 CREG1O75629 220 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 OR2J2O76002 312 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 STC2O76061 302 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 TOX4O94842 621 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 OR4F21O95013 312 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 TNFAIP8O95379 198 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ABHD16AO95870 558 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 TXNDC12O95881 172 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 TRUB2O95900 331 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 BCL10O95999 233 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 C1QBP02746 253 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 CD5P06127 495 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 NUDT17P0C025 328 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ATXN1LP0C7T5 689 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RD3LP0DJH9 198 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 GABRA1P14867 456 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF250P15622 560 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 GOT1P17174 413 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 EN2P19622 333 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ANOS1P23352 680 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SLC6A2P23975 617 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ITGA3P26006 1051 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 GCAP28676 217 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SDC4P31431 198 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 FMO3P31513 532 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 CHI3L1P36222 383 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RFC3P40938 356 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 MMP13P45452 471 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 HTR6P50406 440 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SUOXP51687 545 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 NR0B1P51843 470 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ART1P52961 327 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 CRYBA4P53673 196 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 WNT4P56705 351 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 KLF3P57682 345 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 KCNK10P57789 538 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 TIRAPP58753 221 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RPS20P60866 119 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RPS16P62249 146 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 MRPS9P82933 396 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SLC6A3Q01959 620 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 FPGSQ05932 587 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RBPJQ06330 500 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RGS1Q08116 209 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 INCA1Q0VD86 236 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SREBF2Q12772 1141 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 RAB31Q13636 194 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 FASTKQ14296 549 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 ZNF239Q16600 458 aaKnown RBP4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 C3orf36Q3SXR2 165 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 SLC36A2Q495M3 483 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 LY6G5CQ5SRR4 150 aa4.35□□□□□ -1.71
HMGB3P9-201ENST00000441799 LGSNQ5TDP6 509 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms