RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TCFL5Q9UL49 500 aa20.73■□□□□ 0.91
CDX1-201ENST00000231656 LSM2Q9Y333 95 aaKnown RBP20.73■□□□□ 0.91
CDX1-201ENST00000231656 LOC102723996A0A087X1L8 192 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 SERINC4A6NH21 518 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 SURF4O15260 269 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 PRKNO60260 465 aaPredicted RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 GAS1P54826 345 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 NCS1P62166 190 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 RSPO4Q2I0M5 234 aaPredicted RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 ARMCX4Q5H9R4 360 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 TMPRSS11FQ6ZWK6 438 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 C9orf40Q8IXQ3 194 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 APCDD1LQ8NCL9 501 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 RNF217Q8TC41 542 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 SAMD8Q96LT4 415 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 HS6ST2Q96MM7 605 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 ZNF426Q9BUY5 554 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 SEMA4CQ9C0C4 833 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 ATP13A2Q9NQ11 1180 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 MRPS18AQ9NVS2 196 aaKnown RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 PPIEQ9UNP9 301 aaKnown RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 FARSAQ9Y285 508 aaKnown RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 TMEM5Q9Y2B1 443 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 GPR52Q9Y2T5 361 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 MED31Q9Y3C7 131 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 STMND1H3BQB6 276 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 PRODHO43272 600 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 MLLT10P55197 1068 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 FXYD6P3P58550 94 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 RPS18P62269 152 aaKnown RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 KLHL26Q53HC5 615 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 OR52I1Q8NGK6 324 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 HHATLQ9HCP6 504 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 MEPEQ9NQ76 525 aaPredicted RBP20.72■□□□□ 0.91
CDX1-201ENST00000231656 MED17Q9NVC6 651 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 CLEC2DQ9UHP7 191 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 HS3ST3B1Q9Y662 390 aa20.72■□□□□ 0.91
CDX1-201ENST00000231656 FREM2Q5SZK8 3169 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 OR6C76A6NM76 312 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 CDRT15L2A8MXV6 281 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 RAD1O60671 282 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 CLPXO76031 633 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 INHBBP09529 407 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 FUT1P19526 365 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 GADD45AP24522 165 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 RBMS1P29558 406 aaKnown RBP20.71■□□□□ 0.91
CDX1-201ENST00000231656 RGS6P49758 472 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 EBPQ15125 230 aaKnown RBP20.71■□□□□ 0.91
CDX1-201ENST00000231656 NDUFAF6Q330K2 333 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 CYP4Z2PQ8N1L4 340 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 OR2T33Q8NG76 320 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 ADIPOR1Q96A54 375 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 EFHD2Q96C19 240 aaPredicted RBP20.71■□□□□ 0.91
CDX1-201ENST00000231656 BPIFA2Q96DR5 249 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 LGALS12Q96DT0 336 aa20.71■□□□□ 0.91
CDX1-201ENST00000231656 NXF5Q9H1B4 397 aaKnown RBP20.71■□□□□ 0.91
CDX1-201ENST00000231656 DIMT1Q9UNQ2 313 aaKnown RBP20.71■□□□□ 0.91
CDX1-201ENST00000231656 C2orf92A0A1B0GVN3 265 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 KPNA4O00629 521 aaPredicted RBP20.7■□□□□ 0.9
CDX1-201ENST00000231656 IL33O95760 270 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 CH25HO95992 272 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 TBXA2RP21731 343 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 GRK5P34947 590 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 RBM34P42696 430 aaKnown RBP20.7■□□□□ 0.9
CDX1-201ENST00000231656 ENTPD1P49961 510 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 RPS15P62841 145 aaKnown RBP20.7■□□□□ 0.9
CDX1-201ENST00000231656 DCTN2Q13561 401 aaKnown RBP20.7■□□□□ 0.9
CDX1-201ENST00000231656 MED22Q15528 200 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 LINC00114Q6XXX2 140 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 SLC29A4Q7RTT9 530 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 ANKK1Q8NFD2 765 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 FANK1Q8TC84 345 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 OIT3Q8WWZ8 545 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 GAL3ST4Q96RP7 486 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 MGLLQ99685 303 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 TEX12Q9BXU0 123 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 OR52D1Q9H346 318 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 UBQLN3Q9H347 655 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 HEATR5AQ86XA9 2040 aa20.7■□□□□ 0.9
CDX1-201ENST00000231656 FRG2CA6NGY1 282 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 EFCAB9A8MZ26 197 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 AIREO43918 545 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 CSTAP01040 98 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 IGHEP01854 428 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 DNASE1L3Q13609 305 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 PCOLCEQ15113 449 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 FNDC7Q5VTL7 733 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 AADACL4Q5VUY2 407 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 C19orf48Q6RUI8 117 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 KIRREL2Q6UWL6 708 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 SLC34A3Q8N130 599 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 FAM71CQ8NEG0 241 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 DYNC2LI1Q8TCX1 351 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 LCORQ96JN0 433 aaPredicted RBP20.69■□□□□ 0.9
CDX1-201ENST00000231656 WWTR1Q9GZV5 400 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 FGF20Q9NP95 211 aaPredicted RBP20.69■□□□□ 0.9
CDX1-201ENST00000231656 IL20RAQ9UHF4 553 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 IGHV1-45A0A0A0MS14 117 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 C21orf140B9A014 251 aa20.69■□□□□ 0.9
CDX1-201ENST00000231656 TERTO14746 1132 aaKnown RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms