RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SH2D2AQ9NP31 389 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 ATP13A2Q9NQ11 1180 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 HPF1Q9NWY4 346 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 CNIH4Q9P003 139 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 WIF1Q9Y5W5 379 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 FRYQ5TBA9 3013 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 CEP295Q9C0D2 2601 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 MED13Q9UHV7 2174 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 PIEZO1Q92508 2521 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 NKX2-8O15522 239 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 KLF4O43474 513 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 TP53P04637 393 aaPredicted RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 SLC1A3P43003 542 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 CBFBQ13951 182 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 PRAMEF20Q5VT98 475 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 UGT2A3Q6UWM9 527 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 ATG4DQ86TL0 474 aaPredicted RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 RNF113BQ8IZP6 322 aaKnown RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 ZNF563Q8TA94 476 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 PAQR8Q8TEZ7 354 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 SECISBP2Q96T21 854 aaKnown RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 MEPEQ9NQ76 525 aaPredicted RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 C20orf141Q9NUB4 165 aa16.96■□□□□ 0.3
CLN3-206ENST00000360019 RYDENQ9NUL5 291 aaKnown RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 NDRG4Q9ULP0 352 aaKnown RBP16.96■□□□□ 0.3
CLN3-206ENST00000360019 SPTBN4Q9H254 2564 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 A0A087WUJ7 227 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 KPNA4O00629 521 aaPredicted RBP16.95■□□□□ 0.3
CLN3-206ENST00000360019 BCKDKO14874 412 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 WISP1O95388 367 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 NUDT14O95848 222 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 IGFBP1P08833 259 aaPredicted RBP16.95■□□□□ 0.3
CLN3-206ENST00000360019 CCL3P10147 92 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 PGCP20142 388 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 ITGA3P26006 1051 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 RBM34P42696 430 aaKnown RBP16.95■□□□□ 0.3
CLN3-206ENST00000360019 GPR4P46093 362 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 GSSP48637 474 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 RPP38P78345 283 aaKnown RBP16.95■□□□□ 0.3
CLN3-206ENST00000360019 KEAP1Q14145 624 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 MEP1AQ16819 746 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 TMEM81Q6P7N7 255 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 P3H2Q8IVL5 708 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 BEST3Q8N1M1 668 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 CLEC1AQ8NC01 280 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 GNPDA2Q8TDQ7 276 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 GPR119Q8TDV5 335 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 ANKRD10Q9NXR5 420 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 WASF3Q9UPY6 502 aa16.95■□□□□ 0.3
CLN3-206ENST00000360019 GNB5O14775 395 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 SOX14O95416 240 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 OSMP13725 252 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 CHMP24386 653 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 FPR3P25089 353 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 COX10Q12887 443 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 TSPAN31Q12999 210 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 RAPSNQ13702 412 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 INPP5JQ15735 1006 aaPredicted RBP16.94■□□□□ 0.3
CLN3-206ENST00000360019 ZNF691Q5VV52 312 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 HS6ST2Q96MM7 605 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 NR1H4Q96RI1 486 aaPredicted RBP16.94■□□□□ 0.3
CLN3-206ENST00000360019 PITX2Q99697 317 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 LHPPQ9H008 270 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 ADAM19Q9H013 955 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 CPNE5Q9HCH3 593 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 SELENONQ9NZV5 590 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 MED11Q9P086 117 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 PPP4R1LQ9P1A2 415 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 MED31Q9Y3C7 131 aa16.94■□□□□ 0.3
CLN3-206ENST00000360019 IGLV3-32A0A0A0MS00 114 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 PRKAR1AP10644 381 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 ESRRGP62508 458 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 PRKCDQ05655 676 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 SNTA1Q13424 505 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 QPRTQ15274 297 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 KRT80Q6KB66 452 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 ISLR2Q6UXK2 745 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 MDGA2Q7Z553 956 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CCDC71Q8IV32 467 aaPredicted RBP16.93■□□□□ 0.3
CLN3-206ENST00000360019 GATA6Q92908 595 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 NTNG2Q96CW9 530 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 HRASLS5Q96KN8 279 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 FRMD6Q96NE9 622 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 SCNM1Q9BWG6 230 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 DSN1Q9H410 356 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 PROK2Q9HC23 129 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 ENOPH1Q9UHY7 261 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 GMPPBQ9Y5P6 360 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CNTRLQ7Z7A1 2325 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 IGKV1D-42A0A075B6H8 117 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 ANKUB1A6NFN9 424 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 ARGFXA6NJG6 315 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CDC42EP2O14613 210 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 IFI30P13284 250 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 MAKP20794 623 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 GSTM3P21266 225 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 TACR3P29371 465 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CRISP1P54107 249 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CTBP2P56545 445 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 MYBPC1Q00872 1141 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms