RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TMEM203Q969S6 136 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TRMT61AQ96FX7 289 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 CEP19Q96LK0 163 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SECISBP2Q96T21 854 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 NDC1Q9BTX1 674 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 HOXD1Q9GZZ0 328 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ERVMER34-1Q9H9K5 563 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SNTG1Q9NSN8 517 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ERVK13-1Q9NX77 482 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC35A3Q9Y2D2 325 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 AKAP8O43823 692 aaKnown RBP11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC6A6P31641 620 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 GABRA5P31644 462 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 RUNX1T1Q06455 604 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 CRYZQ08257 329 aaKnown RBP11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 QSOX2Q6ZRP7 698 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 SLITRK4Q8IW52 837 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC25A45Q8N413 288 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 PARP16Q8N5Y8 322 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF527Q8NB42 609 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF485Q8NCK3 441 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 OR51G2Q8NGK0 314 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 OR1L3Q8NH93 324 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 OIT3Q8WWZ8 545 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 CLIP3Q96DZ5 547 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 C1GALT1C1Q96EU7 318 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC46A1Q96NT5 459 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 SMURF1Q9HCE7 757 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 MKKSQ9NPJ1 570 aaPredicted RBP11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 TOR4AQ9NXH8 423 aa11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 DHCR7Q9UBM7 475 aaKnown RBP11.9□□□□□ -0.5
SPTLC1-201ENST00000262554 MN1Q10571 1320 aaPredicted RBP11.9□□□□□ -0.51
SPTLC1-201ENST00000262554 ISPDA4D126 451 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC22A31A6NKX4 558 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SOX1O00570 391 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 HYAL3O43820 417 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 IL1AP01583 271 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 DCNP07585 359 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 NGFRP08138 427 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 HPGDP15428 266 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF3P17036 446 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 HK1P19367 917 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 RORAP35398 523 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CD79BP40259 229 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ETV6P41212 452 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 PPICP45877 212 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC37A1P57057 533 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 RPS25P62851 125 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CFHR1Q03591 330 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ACSM1Q08AH1 577 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 NDUFAF6Q330K2 333 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CRTC2Q53ET0 693 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 KLHL26Q53HC5 615 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 C22orf42Q6IC83 251 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 TMPRSS11AQ6ZMR5 421 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 PRSS42Q7Z5A4 293 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF554Q86TJ5 538 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 LSRQ86X29 649 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 KMT5CQ86Y97 462 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SNRNP27Q8WVK2 155 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 EFHD2Q96C19 240 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 KCTD7Q96MP8 289 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 TNFRSF13CQ96RJ3 184 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 MED20Q9H944 212 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ABCB10Q9NRK6 738 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 UBQLN4Q9NRR5 601 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SERTAD3Q9UJW9 196 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 MRTO4Q9UKD2 239 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 GSTK1Q9Y2Q3 226 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SF3B6Q9Y3B4 125 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SIT1Q9Y3P8 196 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CLCA3PQ9Y6N3 262 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 FUOMA2VDF0 154 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 A8MU76 341 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 A8MUA0 341 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 J3QRE1 110 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 PLD2O14939 933 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CDRT1O95170 752 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 IL33O95760 270 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 IFNGP01579 166 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 PEPDP12955 493 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 FOSL2P15408 326 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 FBLP22087 321 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 NOS3P29474 1203 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CSF2RBP32927 897 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ARRB1P49407 418 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 RPS7P62081 194 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF791Q3KP31 576 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 KLHL12Q53G59 568 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ARHGAP11AQ6P4F7 1023 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 WDR74Q6RFH5 385 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 PLEKHG7Q6ZR37 379 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 ACBD7Q8N6N7 88 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC37A3Q8NCC5 494 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SGTBQ96EQ0 304 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC41A2Q96JW4 573 aa11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 CDX2Q99626 313 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-201ENST00000262554 OR8D2Q9GZM6 311 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms