RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 RPS18P62269 152 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 PTGES3Q15185 160 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 RBM48Q5RL73 367 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 MARCH3Q86UD3 253 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 NRMQ8IXM6 262 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 CADM2Q8N3J6 435 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 GRHL3Q8TE85 626 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 DNAJA4Q8WW22 397 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 TTC9Q92623 222 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 HDAC2Q92769 488 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 PCNX2A6NKB5 2137 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 ZAR1LA6NP61 321 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 ZNF354AO60765 605 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 ICAM2P13598 275 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 OTX2P32243 289 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 RBM34P42696 430 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 CDK5R2Q13319 367 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 TOP3AQ13472 1001 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 MEP1AQ16819 746 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 ALG10BQ5I7T1 473 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 C6orf141Q5SZD1 244 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 B3GNT6Q6ZMB0 384 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 WDR88Q6ZMY6 472 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 Q6ZPB1 254 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 DEPDC4Q8N2C3 294 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 HGDQ93099 445 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 GPA33Q99795 319 aa16.17■□□□□ 0.18
SHKBP1-224ENST00000600718 STMND1H3BQB6 276 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 OIP5O43482 229 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 OR2J2O76002 312 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 NTN1O95631 604 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 FPR3P25089 353 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 POU1F1P28069 291 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 ELK4P28324 431 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 DLSTP36957 453 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 CTU2Q2VPK5 515 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 WBP2NLQ6ICG8 309 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 LINC00114Q6XXX2 140 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 CCDC71Q8IV32 467 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 MISPQ8IVT2 679 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 ARSGQ96EG1 525 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 FAM46AQ96IP4 442 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 CCNL2Q96S94 520 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 RTN4RQ9BZR6 473 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 ZNF160Q9HCG1 818 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 RYDENQ9NUL5 291 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 MED31Q9Y3C7 131 aa16.16■□□□□ 0.18
SHKBP1-224ENST00000600718 TRIM64A6NGJ6 449 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 H3BN98 237 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 TERTO14746 1132 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 KLF4O43474 513 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 ANGPTL1O95841 491 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 HPP00738 406 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 TP53P04637 393 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 FBXW4P57775 412 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 PRKCDQ05655 676 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 CBLN3Q6UW01 205 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 LYPD8Q6UX82 237 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 RASSF6Q6ZTQ3 369 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 ASCL5Q7RTU5 278 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 CDK20Q8IZL9 346 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 TMCO5AQ8N6Q1 288 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 TSPAN14Q8NG11 270 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 NMD3Q96D46 503 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 ZNF426Q9BUY5 554 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 MRPS26Q9BYN8 205 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 GALNT8Q9NY28 637 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 TMEM5Q9Y2B1 443 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 SPEGQ15772 3267 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 HCRTR2O43614 444 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 PIP5K1CO60331 668 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 OR6B1O95007 311 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 FBXO45P0C2W1 286 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 CD82P27701 267 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 IDH2P48735 452 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 GABREP78334 506 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 ZNF117Q03924 483 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 MAD2L1BPQ15013 274 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 NODALQ96S42 347 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 RASL10BQ96S79 203 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 ADNPQ9H2P0 1102 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 CNIH4Q9P003 139 aa16.15■□□□□ 0.18
SHKBP1-224ENST00000600718 SOX14O95416 240 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CLPTM1O96005 669 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 TFAP2AP05549 437 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CELA2AP08217 269 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 RBMS1P29558 406 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CCR4P51679 360 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CTBP2P56545 445 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CDC42P60953 191 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 CXCR4P61073 352 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 SLX4IPQ5VYV7 408 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 ENTHD1Q8IYW4 607 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 OR5M3Q8NGP4 307 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 RNF138Q8WVD3 245 aa16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 YARS2Q9Y2Z4 477 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-224ENST00000600718 A0A087WUJ7 227 aa16.13■□□□□ 0.17
SHKBP1-224ENST00000600718 SCO2O43819 266 aa16.13■□□□□ 0.17
SHKBP1-224ENST00000600718 IGFBP1P08833 259 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-224ENST00000600718 PNMTP11086 282 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms