RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MTNR1AP48039 350 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TPMTP51580 245 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 POU6F2P78424 691 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 C18orf21Q32NC0 220 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CFAP206Q8IYR0 622 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF687Q8N1G0 1237 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DEFB119Q8N690 84 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TSEN15Q8WW01 171 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PNPLA2Q96AD5 504 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ACAT2Q9BWD1 397 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PLA2G12AQ9BZM1 189 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ZCCHC2Q9C0B9 1178 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CMC2Q9NRP2 79 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TINAGQ9UJW2 476 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FCF1Q9Y324 198 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 KCNJ13O60928 360 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 H1F0P07305 194 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ELFN1P0C7U0 828 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GLULP15104 373 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CORO1AP31146 461 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RPS4XP62701 263 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC7A9P82251 487 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 HSPB3Q12988 150 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SRSF5Q13243 272 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 HEPACAMQ14CZ8 416 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 VWA2Q5GFL6 755 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 NIPAL3Q6P499 406 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 AGTRAPQ6RW13 159 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 LCTLQ6UWM7 567 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 LIPIQ6XZB0 460 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GID4Q8IVV7 300 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 KLK6Q92876 244 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GTPBP3Q969Y2 492 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DIRAS2Q96HU8 199 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 WFDC6Q9BQY6 131 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GINS4Q9BRT9 223 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 MS4A8Q9BY19 250 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 IFT22Q9H7X7 185 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC35A3Q9Y2D2 325 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 A0A0A6YYJ9 748 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RFPL4AA6NLU0 287 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 C12orf71A8MTZ7 269 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RFPL4AL1F8VTS6 287 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PIN1P1O15428 100 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 IGHV2-5P01817 119 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GPR143P51810 404 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 COL9A2Q14055 689 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ZMYND11Q15326 602 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 C3orf33Q6P1S2 294 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 Q6ZSR3 168 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 COMMD6Q7Z4G1 85 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 C12orf40Q86WS4 652 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ARL14EPQ8N8R7 260 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 EXD3Q8N9H8 876 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 OR9Q2Q8NGE9 314 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ARMC5Q96C12 935 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TREX2Q9BQ50 279 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 AICDAQ9GZX7 198 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DPEP2Q9H4A9 486 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PLAGL1Q9UM63 463 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CACNA1IQ9P0X4 2223 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FAM240BA0A1B0GVZ2 78 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CIB4A0PJX0 185 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A14O95258 325 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RAB36O95755 333 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CDH12P55289 794 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CPSF6Q16630 551 aaKnown RBP eCLIP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PWWP2BQ6NUJ5 590 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC34A3Q8N130 599 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FIBINQ8TAL6 211 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SMPDL3BQ92485 455 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PMEPA1Q969W9 287 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 MOAP1Q96BY2 351 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 POM121Q96HA1 1249 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 B3GALT6Q96L58 329 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TBX5Q99593 518 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CHIAQ9BZP6 476 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC6A15Q9H2J7 730 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 YARS2Q9Y2Z4 477 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 OR10H1Q9Y4A9 318 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GNB5O14775 395 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 SURF4O15260 269 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 GADD45GO95257 159 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 APOC1P02654 83 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 POU2F1P14859 743 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 CXCL2P19875 107 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 GDF5P43026 501 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 TLE2Q04725 743 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 CHIT1Q13231 466 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 KLHL26Q53HC5 615 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 ADGRD2Q7Z7M1 963 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF595Q8IYB9 648 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 PPCDCQ96CD2 204 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 C2orf49Q9BVC5 232 aaPredicted RBP4.96□□□□□ -1.61
SYNE1-220ENST00000471834 TSSK6Q9BXA6 273 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 SEMA3GQ9NS98 782 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 MAB21L2Q9Y586 359 aa4.96□□□□□ -1.61
SYNE1-220ENST00000471834 TRBV4-1A0A0J9YWV2 114 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM272A0A1B0GTI8 110 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms