RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GATSQ8NAP1 163 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 OR5W2Q8NH69 310 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 ST8SIA1Q92185 356 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 AURKBQ96GD4 344 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 SH3YL1Q96HL8 342 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 LAT2Q9GZY6 243 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 MTHFD2LQ9H903 347 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 CALHM2Q9HA72 323 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 CACYBPQ9HB71 228 aaKnown RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 A4GALTQ9NPC4 353 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 MED17Q9NVC6 651 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 SLC25A37Q9NYZ2 338 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 TNFRSF10DQ9UBN6 386 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 MKLN1Q9UL63 735 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 VDAC3Q9Y277 283 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 GPC6Q9Y625 555 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 PKDREJQ9NTG1 2253 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 PRAMEF27A3QJZ7 478 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 MBD3L4A6NDZ8 208 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 MBD3L3A6NE82 208 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 AGAP5A6NIR3 686 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 MBD3L5A6NJ08 208 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 EVPLLA8MZ36 301 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CLDN14O95500 239 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CSTAP01040 98 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 NPPAP01160 153 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 THBS1P07996 1170 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 LINGO3P0C6S8 592 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 GLI4P10075 376 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 ETFAP13804 333 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 NID1P14543 1247 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 ME2P23368 584 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 PGM1P36871 562 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 SLC6A8P48029 635 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 DLX5P56178 289 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CHRNEQ04844 493 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 SYPL1Q16563 259 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 TRMT5Q32P41 509 aaKnown RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 LIN52Q52LA3 116 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 SLC25A53Q5H9E4 307 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 RNF220Q5VTB9 566 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 FBXW10Q5XX13 1052 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 ARSKQ6UWY0 536 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 C3P1Q6ZMU1 363 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 PEX5LQ8IYB4 626 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 TMCO5AQ8N6Q1 288 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 ANKFN1Q8N957 763 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 MBD3L2Q8NHZ7 208 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 BBS10Q8TAM1 723 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 WDR60Q8WVS4 1066 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 SLC35B4Q969S0 331 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 MRGPRX4Q96LA9 322 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CPPED1Q9BRF8 314 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 TMEM38AQ9H6F2 299 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 RUBCNLQ9H714 662 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 BCL2L10Q9HD36 194 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 SAR1AQ9NR31 198 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 PAQR5Q9NXK6 330 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 VAPAQ9P0L0 249 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CLCF1Q9UBD9 225 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 PLEKHB1Q9UF11 243 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 KCNE5Q9UJ90 142 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 CARD8Q9Y2G2 431 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 RPH3AQ9Y2J0 694 aaPredicted RBP10.72□□□□□ -0.69
VPS52-213ENST00000461743 CAPN7Q9Y6W3 813 aa10.72□□□□□ -0.69
VPS52-213ENST00000461743 A0A0G2JPF8 293 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 CENPVL1A0A0U1RR11 272 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HSPB2A8KAH6 182 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HNRNPCL2B2RXH8 293 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HNRNPCL3B7ZW38 293 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 H0YHG0 523 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 FAAHO00519 579 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 NDUFAB1O14561 156 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HNRNPCL1O60812 293 aaKnown RBP10.71□□□□□ -0.69
VPS52-213ENST00000461743 CCDC22O60826 627 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 CLDN1O95832 211 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 NUDT14O95848 222 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 BCHEP06276 602 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 TFPTP0C1Z6 253 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HNRNPCL4P0DMR1 293 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 ARAFP10398 606 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 UQCRBP14927 111 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 GPX2P18283 190 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 PGCP20142 388 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 PSMA4P25789 261 aaKnown RBP10.71□□□□□ -0.69
VPS52-213ENST00000461743 LSP1P33241 339 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 RPS3AP61247 264 aaKnown RBP10.71□□□□□ -0.69
VPS52-213ENST00000461743 RAC1P63000 192 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 KCNJ10P78508 379 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 KLF10Q13118 480 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 SELENBP1Q13228 472 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 HSPB2Q16082 182 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 MAPK14Q16539 360 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 SLC25A35Q3KQZ1 300 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 GCNT6Q5T4J0 391 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 CBLN3Q6UW01 205 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 DLEU7Q6UYE1 221 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 SPATA21Q7Z572 469 aa10.71□□□□□ -0.69
VPS52-213ENST00000461743 GRAMD2AQ8IUY3 354 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms