RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 RIPPLY3P57055 190 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 CARD18P57730 90 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 STX3Q13277 289 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 KEAP1Q14145 624 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 DEFB113Q30KQ7 82 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 CHDHQ8NE62 594 aaPredicted RBP18.56■□□□□ 0.56
SDC1-205ENST00000447124 OR8J2Q8NGG1 315 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 ROBO4Q8WZ75 1007 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 GMPPAQ96IJ6 420 aaPredicted RBP18.56■□□□□ 0.56
SDC1-205ENST00000447124 MARK4Q96L34 752 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 NUF2Q9BZD4 464 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 DPY30Q9C005 99 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 PAQR5Q9NXK6 330 aaPredicted RBP18.56■□□□□ 0.56
SDC1-205ENST00000447124 MCTS1Q9ULC4 181 aaKnown RBP18.56■□□□□ 0.56
SDC1-205ENST00000447124 ACTL7BQ9Y614 415 aa18.56■□□□□ 0.56
SDC1-205ENST00000447124 CENPVL1A0A0U1RR11 272 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 GTPBP1O00178 669 aaKnown RBP18.55■□□□□ 0.56
SDC1-205ENST00000447124 SS18L1O75177 396 aaPredicted RBP18.55■□□□□ 0.56
SDC1-205ENST00000447124 SYNGR4O95473 234 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 C1QCP02747 245 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 KLK2P20151 261 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 CRYGSP22914 178 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 LOXP28300 417 aaPredicted RBP18.55■□□□□ 0.56
SDC1-205ENST00000447124 SFTPDP35247 375 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 WDR4P57081 412 aaKnown RBP18.55■□□□□ 0.56
SDC1-205ENST00000447124 ADAM8P78325 824 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 BST1Q10588 318 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 EXOC3L2Q2M3D2 409 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 ANKRD46Q86W74 232 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 ZNF527Q8NB42 609 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 OR6K3Q8NGY3 331 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 KLHL15Q96M94 604 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 MED18Q9BUE0 208 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 SRXN1Q9BYN0 137 aa18.55■□□□□ 0.56
SDC1-205ENST00000447124 RNF103-CHMP3A0A140T963 221 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 PRSS51A0A1B0GVH4 220 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 H3BNH8 94 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 NTN1O95631 604 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 CPSF4O95639 269 aaKnown RBP18.54■□□□□ 0.56
SDC1-205ENST00000447124 TUBBP07437 444 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 PRKCAP17252 672 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 LBPP18428 481 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 ADH6P28332 368 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 FOXD4Q12950 439 aaPredicted RBP18.54■□□□□ 0.56
SDC1-205ENST00000447124 GPR68Q15743 365 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 TMEM176BQ3YBM2 270 aaPredicted RBP18.54■□□□□ 0.56
SDC1-205ENST00000447124 PDZK1Q5T2W1 519 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 BHLHB9Q6PI77 547 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 ZNF614Q8N883 585 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 OR4A15Q8NGL6 344 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 RFWD2Q8NHY2 731 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 ARSGQ96EG1 525 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 ZC3HAV1LQ96H79 300 aaKnown RBP18.54■□□□□ 0.56
SDC1-205ENST00000447124 TEX37Q96LM6 180 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 KLHL4Q9C0H6 718 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 OR51I1Q9H343 314 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 MEAF6Q9HAF1 191 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 EMC9Q9Y3B6 208 aa18.54■□□□□ 0.56
SDC1-205ENST00000447124 SERINC4A6NH21 518 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 DUXAA6NLW8 204 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 EIF4E2O60573 245 aaKnown RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 SNUPNO95149 360 aaKnown RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 NUDT14O95848 222 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 PLGP00747 810 aaPredicted RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 THBDP07204 575 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 ME2P23368 584 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 SUMO3P55854 103 aaPredicted RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 CTBP2P56545 445 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 CASP8Q14790 479 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 ZNF141Q15928 474 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 ARHGAP11BQ3KRB8 267 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 SLC25A53Q5H9E4 307 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 SPANXN4Q5MJ08 99 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 PDSS1Q5T2R2 415 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 HEPHL1Q6MZM0 1159 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 STAC2Q6ZMT1 411 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 ATP6V1C2Q8NEY4 427 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 OR5W2Q8NH69 310 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 MIPOL1Q8TD10 442 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 TESCQ96BS2 214 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 PIK3IP1Q96FE7 263 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 SLC35G5Q96KT7 338 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 PAIP2Q9BPZ3 127 aaKnown RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 NMUR2Q9GZQ4 415 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 COQ10BQ9H8M1 238 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 GLRX2Q9NS18 164 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 ZNF226Q9NYT6 803 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 MKLN1Q9UL63 735 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 PCDHGB4Q9UN71 923 aa18.53■□□□□ 0.56
SDC1-205ENST00000447124 GPC6Q9Y625 555 aaPredicted RBP18.53■□□□□ 0.56
SDC1-205ENST00000447124 ARID1AO14497 2285 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 ETV2O00321 342 aaPredicted RBP18.52■□□□□ 0.56
SDC1-205ENST00000447124 SDHDO14521 159 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 ZNF264O43296 627 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 DNAJA2O60884 412 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 UGT2B17O75795 530 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 ALDOCP09972 364 aaKnown RBP18.52■□□□□ 0.56
SDC1-205ENST00000447124 OR12D1P0DN82 309 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 UQCRC2P22695 453 aa18.52■□□□□ 0.56
SDC1-205ENST00000447124 ELK4P28324 431 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms