RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TRANK1O15050 2925 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 DOCK8Q8NF50 2099 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 A0A0G2JPF8 293 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HNRNPCL3B7ZW38 293 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HCN1O60741 890 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 FMO6PO60774 539 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 LGI1O95970 557 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HLA-DPB1P04440 258 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HNRNPCL4P0DMR1 293 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HIST1H1TP22492 207 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 GABRA3P34903 492 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ETV6P41212 452 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 EVX1P49640 407 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 KHKP50053 298 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 DEFA5Q01523 94 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 LGALS3BPQ08380 585 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ANGPT1Q15389 498 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 FAM109BQ6ICB4 259 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 ENPP7Q6UWV6 458 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR52B4Q8NGK2 314 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR2A1Q8NGT9 310 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR5W2Q8NH69 310 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 TRIM43Q96BQ3 446 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 PRRC1Q96M27 445 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ELF4Q99607 663 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 CACNG6Q9BXT2 260 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 IL21RQ9HBE5 538 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SLC6A20Q9NP91 592 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ZSCAN32Q9NX65 697 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MLXQ9UH92 298 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HEATR5AQ86XA9 2040 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 A0A1W2PPV9 198 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 TVP23AA6NH52 213 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 A8MVJ9 347 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 BLOC1S5-TXNDC5H3BN57 136 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 RFPL3O75679 317 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR7A10O76100 309 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 CFDP00746 253 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 IL1AP01583 271 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MAOBP27338 520 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ACTR1BP42025 376 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 P2RX3P56373 397 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ACTR1AP61163 376 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SHC2P98077 582 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MAB21L1Q13394 359 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ATXN7L3Q14CW9 347 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 TRAM2Q15035 370 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 IRF4Q15306 451 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PUS10Q3MIT2 529 aaKnown RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 YIF1BQ5BJH7 314 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 CDKL4Q5MAI5 379 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ZDHHC20Q5W0Z9 365 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 LAMTOR1Q6IAA8 161 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MFSD12Q6NUT3 480 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ZNF687Q8N1G0 1237 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 TOMM5Q8N4H5 51 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 CPA6Q8N4T0 437 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR11H7Q8NGC8 314 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR2T35Q8NGX2 323 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 GOT1L1Q8NHS2 421 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 AP3S1Q92572 193 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 GHSRQ92847 366 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 UBE2E3Q969T4 207 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 RFT1Q96AA3 541 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 LRIG1Q96JA1 1093 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MSLNLQ96KJ4 702 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 COQ10AQ96MF6 247 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SNX18Q96RF0 628 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ZBP1Q9H171 429 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ANKHQ9HCJ1 492 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ZNF304Q9HCX3 659 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PRDM9Q9NQV7 894 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 KLK11Q9UBX7 282 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ENOPH1Q9UHY7 261 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 BAIAP2Q9UQB8 552 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 POLHQ9Y253 713 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HRKO00198 91 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PRICKLE3O43900 615 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 ALX3O95076 343 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PAPLNO95428 1278 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 HPXP02790 462 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 RLN1P04808 185 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SRPRAP08240 638 aaKnown RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 PCSK2P16519 638 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 POU3F2P20265 443 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 NPR2P20594 1047 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ATP5A1P25705 553 aaKnown RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 MPIP34949 423 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 CAPZA2P47755 286 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 GZMKP49863 264 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ATP12AP54707 1039 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PCBP4P57723 403 aaKnown RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 RRAS2P62070 204 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 ASAH1Q13510 395 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 PGGHGQ32M88 737 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MPP7Q5T2T1 576 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MRPL2Q5T653 305 aaKnown RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 KIAA1211LQ6NV74 962 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 FAM26EQ8N5C1 309 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 OR2T33Q8NG76 320 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms