RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 LINC00469Q8N7U9 141 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 BBS10Q8TAM1 723 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FNDC11Q9BVV2 318 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TEX101Q9BY14 249 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR51J1Q9H342 316 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 RNF186Q9NXI6 227 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 KLHL28Q9NXS3 571 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZFR2Q9UPR6 939 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZFC3H1O60293 1989 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FABP12A6NFH5 140 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR10H3O60404 316 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FGF18O76093 207 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NDUFB6O95139 128 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PRAMEF1O95521 474 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 POU2F2P09086 479 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ACADLP28330 430 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CBX5P45973 191 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 STARD6P59095 220 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CSTF1Q05048 431 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GPNMBQ14956 572 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PNLIPRP3Q17RR3 467 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GARNL3Q5VVW2 1013 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ACSM5Q6NUN0 579 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TRIM40Q6P9F5 258 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SHFQ7M4L6 423 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 Q8N402 240 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 C7orf57Q8NEG2 295 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF563Q8TA94 476 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 METTL21AQ8WXB1 218 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ESAMQ96AP7 390 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 LRIG1Q96JA1 1093 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PPIL3Q9H2H8 161 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NKX2-4Q9H2Z4 354 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 BABAM2Q9NXR7 383 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HCN3Q9P1Z3 774 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SHROOM3Q8TF72 1996 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 RAB19A4D1S5 217 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 H3BSH0 61 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 BSGP35613 385 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PDSS1Q5T2R2 415 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF322Q6U7Q0 402 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ARSKQ6UWY0 536 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GALNTL5Q7Z4T8 443 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CLECL1Q8IZS7 167 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 C15orf40Q8WUR7 153 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF296Q8WUU4 475 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ACOT11Q8WXI4 607 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ING5Q8WYH8 240 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PRSS27Q9BQR3 290 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 POLE3Q9NRF9 147 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NLKQ9UBE8 527 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CES1P1Q9UKY3 287 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SIRT4Q9Y6E7 314 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FRMPD3Q5JV73 1810 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 TRBC2A0A5B9 178 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 LDLRAD4O15165 306 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 STC2O76061 302 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 TXNDC12O95881 172 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 THY1P04216 161 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ETV5P41161 510 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 STARP49675 285 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ACSM2AQ08AH3 577 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 LTB4RQ15722 352 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ACSM2BQ68CK6 577 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 RETSATQ6NUM9 610 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 JAZF1Q86VZ6 243 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SERPINA9Q86WD7 417 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 HJURPQ8NCD3 748 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 TSSK3Q96PN8 268 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 COPS8Q99627 209 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PAAF1Q9BRP4 392 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A32Q9H2D1 315 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SNTG1Q9NSN8 517 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SAGE1Q9NXZ1 904 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SLC2A8Q9NY64 477 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CACNG4Q9UBN1 327 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ST6GALNAC2Q9UJ37 374 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ST3GAL5Q9UNP4 418 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MRPS7Q9Y2R9 242 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A4P12235 298 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 UQCRC1P31930 480 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PLGLB1Q02325 96 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PHF19Q5T6S3 580 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SLC38A5Q8WUX1 472 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SLC39A7Q92504 469 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 C10orf90Q96M02 699 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MMP28Q9H239 520 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CCDC86Q9H6F5 360 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SCPEP1Q9HB40 452 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CD207Q9UJ71 328 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SSR3Q9UNL2 185 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SPINT1O43278 529 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 LANCL1O43813 399 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 STATHP02808 62 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 UQCRC2P22695 453 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 STAT5AP42229 794 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 WASP42768 502 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PRLHRP49683 370 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 POLR2LP62875 67 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms