RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SMIM11AP58511 58 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 CMPK2Q5EBM0 449 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 DCST1Q5T197 706 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 ZNF770Q6IQ21 691 aaPredicted RBP17.07■□□□□ 0.32
CLN3-206ENST00000360019 SLC5A8Q8N695 610 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 ATG16L2Q8NAA4 619 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 NR4A3Q92570 626 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 SLC35B4Q969S0 331 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 NAF1Q96HR8 494 aaKnown RBP17.07■□□□□ 0.32
CLN3-206ENST00000360019 ZNF570Q96NI8 536 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 RASL10BQ96S79 203 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 FEVQ99581 238 aa17.07■□□□□ 0.32
CLN3-206ENST00000360019 AKAP13Q12802 2813 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 ALG1L2C9J202 215 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 MAN1A2O60476 641 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 MITFO75030 526 aaPredicted RBP17.06■□□□□ 0.32
CLN3-206ENST00000360019 CYP7B1O75881 506 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 CCNB2O95067 398 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 THRBP10828 461 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 NAGAP17050 411 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 IGFBP5P24593 272 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 EVI2BP34910 448 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 LSM11P83369 360 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLN3-206ENST00000360019 ST3GAL3Q11203 375 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 SKP2Q13309 424 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 OR1Q1Q15612 314 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 ZIK1Q3SY52 487 aaPredicted RBP17.06■□□□□ 0.32
CLN3-206ENST00000360019 PODNL1Q6PEZ8 512 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 LSRQ86X29 649 aaPredicted RBP17.06■□□□□ 0.32
CLN3-206ENST00000360019 OR5M3Q8NGP4 307 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 PHOSPHO1Q8TCT1 267 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 TFAP2CQ92754 450 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 HGDQ93099 445 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 SLC41A3Q96GZ6 507 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 PSD2Q9BQI7 771 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 ADI1Q9BV57 179 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 KIF17Q9P2E2 1029 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 TMCC3Q9ULS5 477 aa17.06■□□□□ 0.32
CLN3-206ENST00000360019 A0A1W2PQD3 144 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 SH3PXD2BA1X283 911 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 C17orf51A8MQB3 221 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ADAM10O14672 748 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ITGA10O75578 1167 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 NTN1O95631 604 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 UBL4AP11441 157 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 MERTKQ12866 999 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ATP1A4Q13733 1029 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 EFR3AQ14156 821 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 FCRLBQ6BAA4 426 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 CBLN3Q6UW01 205 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 GDF7Q7Z4P5 450 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 MARCH3Q86UD3 253 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 RAB43Q86YS6 212 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 SLC22A8Q8TCC7 542 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 RDH12Q96NR8 316 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 NODALQ96S42 347 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 MBOAT4Q96T53 435 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 POLR2J2Q9GZM3 115 aaKnown RBP17.05■□□□□ 0.32
CLN3-206ENST00000360019 POLR2J3Q9H1A7 115 aaKnown RBP17.05■□□□□ 0.32
CLN3-206ENST00000360019 GPN2Q9H9Y4 310 aaPredicted RBP17.05■□□□□ 0.32
CLN3-206ENST00000360019 LRCH1Q9Y2L9 728 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ARRDC5A6NEK1 342 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 FAAHO00519 579 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 FBXO45P0C2W1 286 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 LIPCP11150 499 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ICAM2P13598 275 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 CBLP22681 906 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 EPS8Q12929 822 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 RTP5Q14D33 572 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ZNF550Q7Z398 422 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 GALNT5Q7Z7M9 940 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 NKAIN4Q8IVV8 208 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 GRHL3Q8TE85 626 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 NIPSNAP1Q9BPW8 284 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 ZNF559Q9BR84 538 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 TBL1XR1Q9BZK7 514 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 TOR3AQ9H497 397 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 SLC7A7Q9UM01 511 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 CARD8Q9Y2G2 431 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 HEATR5AQ86XA9 2040 aa17.05■□□□□ 0.32
CLN3-206ENST00000360019 TRAPPC13A5PLN9 417 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 ZNF264O43296 627 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 DENRO43583 198 aaKnown RBP17.04■□□□□ 0.32
CLN3-206ENST00000360019 LYPD3O95274 346 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 LIFP15018 202 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 IFNA8P32881 189 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 RYKP34925 604 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 TMED10P49755 219 aaKnown RBP17.04■□□□□ 0.32
CLN3-206ENST00000360019 ST13P50502 369 aaKnown RBP17.04■□□□□ 0.32
CLN3-206ENST00000360019 TRAM2Q15035 370 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 SLC36A3Q495N2 470 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 ARMC10Q8N2F6 343 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 SLC15A4Q8N697 577 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 AQP11Q8NBQ7 271 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 RNF138Q8WVD3 245 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 ANKRD19PQ9H560 264 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 EXOSC3Q9NQT5 275 aaKnown RBP17.04■□□□□ 0.32
CLN3-206ENST00000360019 LOC400499M0QZD8 3231 aa17.04■□□□□ 0.32
CLN3-206ENST00000360019 LAMA5O15230 3695 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 A0A087WUU8 490 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms