RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PRKNO60260 465 aaPredicted RBP15.12■□□□□ 0.01
COL4A1-204ENST00000543140 COQ9O75208 318 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 GCGRP47871 477 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 CSNK1EP49674 416 aaKnown RBP15.12■□□□□ 0.01
COL4A1-204ENST00000543140 CDH11P55287 796 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 RACK1P63244 317 aaKnown RBP15.12■□□□□ 0.01
COL4A1-204ENST00000543140 SMAD2Q15796 467 aaKnown RBP15.12■□□□□ 0.01
COL4A1-204ENST00000543140 PGGHGQ32M88 737 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 SMARCD3Q6STE5 483 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 PHC2Q8IXK0 858 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 FAM174AQ8TBP5 190 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 SPACA7Q96KW9 195 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 PTCHD1Q96NR3 888 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 KCNS3Q9BQ31 491 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 SPRTNQ9H040 489 aaPredicted RBP15.12■□□□□ 0.01
COL4A1-204ENST00000543140 CDH10Q9Y6N8 788 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 MAU2Q9Y6X3 613 aa15.12■□□□□ 0.01
COL4A1-204ENST00000543140 SNTNA6NMZ2 147 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 LRRTM2O43300 516 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 AQP9O43315 295 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 HRO43593 1189 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CTNSO60931 367 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 ADAM11O75078 769 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 AK1P00568 194 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 ZGLP1P0C6A0 271 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 PSMA1P25786 263 aaKnown RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CD79BP40259 229 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 RAB40BQ12829 278 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 ZNHIT3Q15649 155 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 TRIM16LQ309B1 348 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 MINDY4Q4G0A6 757 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 SLC35F1Q5T1Q4 408 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 B3GLCTQ6Y288 498 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 LHFPL3Q86UP9 236 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 TOR1AIP2Q8NFQ8 470 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 OR2T33Q8NG76 320 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 OR4F15Q8NGB8 312 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 ASPNQ9BXN1 380 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 PRRG3Q9BZD7 231 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 UBQLN3Q9H347 655 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 QPCTLQ9NXS2 382 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CCDC59Q9P031 241 aaKnown RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 MRPS33Q9Y291 106 aaKnown RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 SPIN1Q9Y657 262 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 UNC119BA6NIH7 251 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 KDM4EB2RXH2 506 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 LYPD3O95274 346 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CRYBB2P43320 205 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 MLLT11Q13015 90 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 RNLSQ5VYX0 342 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 NACC2Q96BF6 587 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 TEX12Q9BXU0 123 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 OR52D1Q9H346 318 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 KRCC1Q9NPI7 259 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 POLE4Q9NR33 117 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 NDUFB11Q9NX14 153 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CHCHD3Q9NX63 227 aaKnown RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 SIDT1Q9NXL6 827 aaKnown RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 ZNF223Q9UK11 482 aaPredicted RBP15.11■□□□□ 0.01
COL4A1-204ENST00000543140 FBXL21Q9UKT6 434 aa15.11■□□□□ 0.01
COL4A1-204ENST00000543140 CLDN4O14493 209 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 IFNA16P05015 189 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 S100A5P33763 92 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 RPS19P39019 145 aaKnown RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 FXYD6P3P58550 94 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 DNASE1L3Q13609 305 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 C3orf38Q5JPI3 329 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 CPOQ8IVL8 374 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 RCBTB1Q8NDN9 531 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 FANK1Q8TC84 345 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 DGAT2Q96PD7 388 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 NXF2Q9GZY0 626 aaKnown RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 ERVK-19Q9WJR5 959 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 CLDN16Q9Y5I7 305 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 STK25O00506 426 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 SOX6P35712 828 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 FNTBP49356 437 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 WNT4P56705 351 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 SKP1P63208 163 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 FAM53BQ14153 422 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 AADACL4Q5VUY2 407 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 NPSR1Q6W5P4 371 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 ZFP41Q8N8Y5 198 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 TM9SF4Q92544 642 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 VSTM2LQ96N03 204 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 CD180Q99467 661 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 YIPF2Q9BWQ6 316 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 RACGAP1Q9H0H5 632 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 TPK1Q9H3S4 243 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 FGF20Q9NP95 211 aaPredicted RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 HINT3Q9NQE9 182 aaKnown RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 ABCB10Q9NRK6 738 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 SEC14L4Q9UDX3 406 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 STUB1Q9UNE7 303 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 PLCL2Q9UPR0 1127 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 CFL2Q9Y281 166 aa15.1■□□□□ 0.01
COL4A1-204ENST00000543140 YARS2Q9Y2Z4 477 aaKnown RBP15.1■□□□□ 0.01
COL4A1-204ENST00000543140 LILRA5A6NI73 299 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms