RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 BTBD2Q9BX70 525 aa10.74□□□□□ -0.69
PTPRF-211ENST00000467464 C20orf27Q9GZN8 174 aa10.74□□□□□ -0.69
PTPRF-211ENST00000467464 PIGUQ9H490 435 aa10.74□□□□□ -0.69
PTPRF-211ENST00000467464 UBQLN4Q9NRR5 601 aa10.74□□□□□ -0.69
PTPRF-211ENST00000467464 ASIC5Q9NY37 505 aa10.74□□□□□ -0.69
PTPRF-211ENST00000467464 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.74□□□□□ -0.69
PTPRF-211ENST00000467464 V9GYY5 206 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-211ENST00000467464 FREM3P0C091 2139 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 DOCK7Q96N67 2140 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ZFHX3Q15911 3703 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 NPIPA5A0A0B4J1W7 369 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 A0A0J9YW62 118 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 NPIPA7E9PJI5 369 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ADAMDEC1O15204 470 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 EFNA2O43921 213 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 SMNDC1O75940 238 aaKnown RBP eCLIP10.73□□□□□ -0.69
PTPRF-211ENST00000467464 RAF1P04049 648 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 DHRS4L1P0CG22 281 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 NPIPA8P0DM63 369 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 CD53P19397 219 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 IL11P20809 199 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 SHC1P29353 583 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 RPL3P39023 403 aaKnown RBP10.73□□□□□ -0.69
PTPRF-211ENST00000467464 POU6F2P78424 691 aaPredicted RBP10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ZNF117Q03924 483 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 MPP2Q14168 576 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 TNFAIP8L3Q5GJ75 292 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 CHMP1BQ7LBR1 199 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ZNF610Q8N9Z0 462 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 FNDC5Q8NAU1 212 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 OR10D3Q8NH80 312 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 SFXN5Q8TD22 340 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ZBTB8AQ96BR9 441 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 PGM2Q96G03 612 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 SH3YL1Q96HL8 342 aaPredicted RBP10.73□□□□□ -0.69
PTPRF-211ENST00000467464 ACTRT3Q9BYD9 372 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 BHLHE41Q9C0J9 482 aaPredicted RBP10.73□□□□□ -0.69
PTPRF-211ENST00000467464 SERHL2Q9H4I8 314 aa10.73□□□□□ -0.69
PTPRF-211ENST00000467464 EIF1AYO14602 144 aaKnown RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CXCL13O43927 109 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 SCN2BO60939 215 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 SS18L1O75177 396 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 HSPA4LO95757 839 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 OPN1LWP04000 364 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 G6PDP11413 515 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 FCGR2AP12318 317 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CD99P14209 185 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 KLK2P20151 261 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 PRPS1L1P21108 318 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 UGT2B10P36537 528 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 SERPINB4P48594 390 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CCT3P49368 545 aaKnown RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 RNF144AP50876 292 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 RAC1P63000 192 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 HBA1P69905 142 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 ADAM8P78325 824 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 EMX2Q04743 252 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 FOXF1Q12946 379 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 FOXD4Q12950 439 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 DEFB113Q30KQ7 82 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 KLHL26Q53HC5 615 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 DCST2Q5T1A1 773 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CPTPQ5TA50 214 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CBLN3Q6UW01 205 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 FAM214BQ7L5A3 538 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 CXorf67Q86X51 503 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 MISPQ8IVT2 679 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 ZNF781Q8N8C0 355 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 OR56A1Q8NGH5 318 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 OR2V1Q8NHB1 315 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 B4GALNT2Q8NHY0 566 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 JADE3Q92613 823 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 SORT1Q99523 831 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 HHATLQ9HCP6 504 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 KLHL28Q9NXS3 571 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 C6orf203Q9P0P8 240 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-211ENST00000467464 HAO1Q9UJM8 370 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 ICAM5Q9UMF0 924 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 SNX8Q9Y5X2 465 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 ACTL7BQ9Y614 415 aa10.72□□□□□ -0.69
PTPRF-211ENST00000467464 ESPNB1AK53 854 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 ETV2O00321 342 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-211ENST00000467464 SCDO00767 359 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 ANKRD28O15084 1053 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 NTN1O95631 604 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 SERPINE1P05121 402 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 DDX5P17844 614 aaKnown RBP10.71□□□□□ -0.69
PTPRF-211ENST00000467464 CRYGSP22914 178 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 HOXC12P31275 282 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 EIF1AXP47813 144 aaKnown RBP10.71□□□□□ -0.69
PTPRF-211ENST00000467464 CLDN8P56748 225 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 RPS3AP61247 264 aaKnown RBP10.71□□□□□ -0.69
PTPRF-211ENST00000467464 PHC1P78364 1004 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 TP53BP2Q13625 1128 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 FGFBP1Q14512 234 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 TOMM34Q15785 309 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-211ENST00000467464 SMU1Q2TAY7 513 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 NDUFAF6Q330K2 333 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 ZNF550Q7Z398 422 aa10.71□□□□□ -0.69
PTPRF-211ENST00000467464 MTERF4Q7Z6M4 381 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms