RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CDRT4Q8N9R6 151 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 DNAAF1Q8NEP3 725 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 OR5H2Q8NGV7 314 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SLC2A12Q8TD20 617 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 C1QTNF2Q9BXJ5 285 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ATG5Q9H1Y0 275 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ARNT2Q9HBZ2 717 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 INTS6Q9UL03 887 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PCDHGA6Q9Y5G7 932 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 N6AMT1Q9Y5N5 214 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 NSG1A0A0A6YYJ2 146 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 H7C1Q1 480 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SOCS2O14508 198 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ATP6V1G1O75348 118 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 EGFP01133 1207 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SRCP12931 536 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 HMGCLP35914 325 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PCBD1P61457 104 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TFF2Q03403 129 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 C1orf61Q13536 156 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PTPRCAPQ14761 206 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ALG10Q5BKT4 473 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 RNASE12Q5GAN4 147 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 RPL22L1Q6P5R6 122 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 HIST2H3AQ71DI3 136 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 LRRC56Q8IYG6 542 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 DND1Q8IYX4 353 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CLDN22Q8N7P3 220 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 KLHDC9Q8NEP7 349 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 DEDD2Q8WXF8 326 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PMEPA1Q969W9 287 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 AP1S3Q96PC3 154 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CRB3Q9BUF7 120 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CHIAQ9BZP6 476 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SLC2A6Q9UGQ3 507 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF337Q9Y3M9 751 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 UGT2A1Q9Y4X1 527 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SLC22A7Q9Y694 548 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CEPT1Q9Y6K0 416 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 DOCK2Q92608 1830 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MN1Q10571 1320 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SMCO3A2RU48 225 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CLDN7O95471 211 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TGFB1P01137 390 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ITGA5P08648 1049 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF28P17035 718 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 AHRP35869 848 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MTNR1BP49286 362 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 KCNAB2Q13303 367 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 RAB31Q13636 194 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SMAD2Q15796 467 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 NTRK2Q16620 822 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TLDC1Q6P9B6 456 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM207Q6UWW9 146 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 LANCL3Q6ZV70 420 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM150AQ86TG1 271 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF280BQ86YH2 543 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 OR2L8Q8NGY9 312 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CA5BP1Q8WTZ4 195 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF486Q96H40 463 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SORCS2Q96PQ0 1159 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TREX1Q9NSU2 369 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PPP4R1LQ9P1A2 415 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MCTS1Q9ULC4 181 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SCN4AP35499 1836 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 LYRM1O43325 122 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CSO75390 466 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 NFYAP23511 347 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ELK4P28324 431 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SSBP1Q04837 148 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 IDO2Q6ZQW0 420 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CIR1Q86X95 450 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 BEST3Q8N1M1 668 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR1J4Q8NGS1 313 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR8K5Q8NH50 307 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MAL2Q969L2 176 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MALSU1Q96EH3 234 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR14A2Q96R54 314 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ADAP2Q9NPF8 381 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ADAMTS7Q9UKP4 1686 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 A0A075B6Q4 140 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 NUDT21O43809 227 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 GPR137BO60478 399 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 NDUFB2O95178 105 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TYRP1P17643 537 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 RAB3AP20336 220 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 DNASE1P24855 282 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ITGB7P26010 798 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CTHP32929 405 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CSNK2A1P68400 391 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 HHEXQ03014 270 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ECH1Q13011 328 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 LTB4RQ15722 352 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CBLL1Q75N03 491 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 NOXA1Q86UR1 476 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 JAGN1Q8N5M9 183 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MFSD9Q8NBP5 474 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR7G1Q8NGA0 311 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR5W2Q8NH69 310 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TFAP2CQ92754 450 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms