RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 TIAM2Q8IVF5 1701 aa32.71■■■□□ 2.83
VEGFA-230ENST00000640482 RPGRQ92834 1020 aaKnown RBP32.71■■■□□ 2.83
VEGFA-230ENST00000640482 UTP14AQ9BVJ6 771 aaKnown RBP32.71■■■□□ 2.83
VEGFA-230ENST00000640482 GLTPD2A6NH11 291 aa32.7■■■□□ 2.83
VEGFA-230ENST00000640482 RRAGCQ9HB90 399 aa32.7■■■□□ 2.83
VEGFA-230ENST00000640482 HYPKQ9NX55 129 aa32.69■■■□□ 2.82
VEGFA-230ENST00000640482 RNF123Q5XPI4 1314 aa32.69■■■□□ 2.82
VEGFA-230ENST00000640482 CCDC88AQ3V6T2 1871 aa32.69■■■□□ 2.82
VEGFA-230ENST00000640482 HSPA6P17066 643 aa32.68■■■□□ 2.82
VEGFA-230ENST00000640482 TCIRG1Q13488 830 aa32.68■■■□□ 2.82
VEGFA-230ENST00000640482 DPY19L2Q6NUT2 758 aa32.67■■■□□ 2.82
VEGFA-230ENST00000640482 RTKN2Q8IZC4 609 aa32.67■■■□□ 2.82
VEGFA-230ENST00000640482 ANKRD36CQ5JPF3 1778 aa32.66■■■□□ 2.82
VEGFA-230ENST00000640482 HOXA10P31260 410 aaPredicted RBP32.66■■■□□ 2.82
VEGFA-230ENST00000640482 CCDC27Q2M243 656 aa32.66■■■□□ 2.82
VEGFA-230ENST00000640482 NLRP10Q86W26 655 aa32.66■■■□□ 2.82
VEGFA-230ENST00000640482 PLBD2Q8NHP8 589 aa32.66■■■□□ 2.82
VEGFA-230ENST00000640482 RBM17Q96I25 401 aaKnown RBP32.66■■■□□ 2.82
VEGFA-230ENST00000640482 NLRP3Q96P20 1036 aa32.66■■■□□ 2.82
VEGFA-230ENST00000640482 FKBP4Q02790 459 aaKnown RBP eCLIP32.65■■■□□ 2.82
VEGFA-230ENST00000640482 ANKRD13DQ6ZTN6 518 aa32.65■■■□□ 2.82
VEGFA-230ENST00000640482 RBM46Q8TBY0 533 aaKnown RBP32.65■■■□□ 2.82
VEGFA-230ENST00000640482 SLC10A5Q5PT55 438 aa32.64■■■□□ 2.82
VEGFA-230ENST00000640482 CHMP4AQ9BY43 222 aa32.63■■■□□ 2.81
VEGFA-230ENST00000640482 DICER1Q9UPY3 1922 aaKnown RBP32.63■■■□□ 2.81
VEGFA-230ENST00000640482 ELL2O00472 640 aaPredicted RBP32.62■■■□□ 2.81
VEGFA-230ENST00000640482 CC2D2BQ6DHV5 1058 aa32.62■■■□□ 2.81
VEGFA-230ENST00000640482 OLFM4Q6UX06 510 aa32.62■■■□□ 2.81
VEGFA-230ENST00000640482 CRAMP1Q96RY5 1269 aa32.62■■■□□ 2.81
VEGFA-230ENST00000640482 VEGFAP15692 232 aaPredicted RBP32.61■■■□□ 2.81
VEGFA-230ENST00000640482 NCBP3Q53F19 620 aaKnown RBP32.61■■■□□ 2.81
VEGFA-230ENST00000640482 TRMT112Q9UI30 125 aaKnown RBP32.61■■■□□ 2.81
VEGFA-230ENST00000640482 C3orf67Q6ZVT6 689 aa32.6■■■□□ 2.81
VEGFA-230ENST00000640482 WWC1Q8IX03 1113 aa32.6■■■□□ 2.81
VEGFA-230ENST00000640482 SH3TC1Q8TE82 1336 aa32.59■■■□□ 2.81
VEGFA-230ENST00000640482 C8orf58Q8NAV2 365 aa32.59■■■□□ 2.81
VEGFA-230ENST00000640482 ZNF277Q9NRM2 450 aaPredicted RBP32.58■■■□□ 2.81
VEGFA-230ENST00000640482 GOLGA2Q08379 1002 aa32.57■■■□□ 2.8
VEGFA-230ENST00000640482 FSTL1Q12841 308 aa32.57■■■□□ 2.8
VEGFA-230ENST00000640482 GRIPAP1Q4V328 841 aa32.57■■■□□ 2.8
VEGFA-230ENST00000640482 PPEF1O14829 653 aaPredicted RBP32.56■■■□□ 2.8
VEGFA-230ENST00000640482 CCDC30Q5VVM6 783 aa32.56■■■□□ 2.8
VEGFA-230ENST00000640482 SYNE4Q8N205 404 aa32.56■■■□□ 2.8
VEGFA-230ENST00000640482 PSMD1Q99460 953 aa32.56■■■□□ 2.8
VEGFA-230ENST00000640482 ISCA1Q9BUE6 129 aa32.56■■■□□ 2.8
VEGFA-230ENST00000640482 HCLS1P14317 486 aaPredicted RBP32.55■■■□□ 2.8
VEGFA-230ENST00000640482 IL16Q14005 1332 aa32.54■■■□□ 2.8
VEGFA-230ENST00000640482 RIC3Q7Z5B4 369 aa32.54■■■□□ 2.8
VEGFA-230ENST00000640482 TSR2Q969E8 191 aaKnown RBP32.54■■■□□ 2.8
VEGFA-230ENST00000640482 TMX4Q9H1E5 349 aaPredicted RBP32.54■■■□□ 2.8
VEGFA-230ENST00000640482 WDR90Q96KV7 1748 aa32.54■■■□□ 2.8
VEGFA-230ENST00000640482 SNED1Q8TER0 1413 aa32.53■■■□□ 2.8
VEGFA-230ENST00000640482 IARSP41252 1262 aaKnown RBP32.53■■■□□ 2.8
VEGFA-230ENST00000640482 PHAXQ9H814 394 aaKnown RBP32.53■■■□□ 2.8
VEGFA-230ENST00000640482 ATP5J2-PTCD1G3V325 749 aa32.52■■■□□ 2.8
VEGFA-230ENST00000640482 APLP1P51693 650 aa32.52■■■□□ 2.8
VEGFA-230ENST00000640482 SMC1BQ8NDV3 1235 aa32.52■■■□□ 2.8
VEGFA-230ENST00000640482 TRIM28Q13263 835 aaKnown RBP32.51■■■□□ 2.79
VEGFA-230ENST00000640482 ABCC4O15439 1325 aa32.51■■■□□ 2.79
VEGFA-230ENST00000640482 TCERG1O14776 1098 aaKnown RBP32.5■■■□□ 2.79
VEGFA-230ENST00000640482 DDNO94850 711 aaPredicted RBP32.5■■■□□ 2.79
VEGFA-230ENST00000640482 TSPYL6Q8N831 410 aa32.5■■■□□ 2.79
VEGFA-230ENST00000640482 POTECB2RU33 542 aa32.49■■■□□ 2.79
VEGFA-230ENST00000640482 DDX58O95786 925 aaKnown RBP32.49■■■□□ 2.79
VEGFA-230ENST00000640482 DDX46Q7L014 1031 aaKnown RBP32.49■■■□□ 2.79
VEGFA-230ENST00000640482 BBOX1O75936 387 aa32.48■■■□□ 2.79
VEGFA-230ENST00000640482 ZNF428Q96B54 188 aa32.48■■■□□ 2.79
VEGFA-230ENST00000640482 ATP6V0A2Q9Y487 856 aa32.48■■■□□ 2.79
VEGFA-230ENST00000640482 JDP2Q8WYK2 163 aa32.47■■■□□ 2.79
VEGFA-230ENST00000640482 FAM89AQ96GI7 184 aa32.47■■■□□ 2.79
VEGFA-230ENST00000640482 STK31Q9BXU1 1019 aa32.47■■■□□ 2.79
VEGFA-230ENST00000640482 LAMB2P55268 1798 aa32.47■■■□□ 2.79
VEGFA-230ENST00000640482 WDR63Q8IWG1 891 aa32.46■■■□□ 2.79
VEGFA-230ENST00000640482 SALL2Q9Y467 1007 aaPredicted RBP32.46■■■□□ 2.79
VEGFA-230ENST00000640482 TWISTNBQ3B726 338 aaPredicted RBP32.45■■■□□ 2.79
VEGFA-230ENST00000640482 FAM9BQ8IZU0 186 aa32.45■■■□□ 2.79
VEGFA-230ENST00000640482 FZD9O00144 591 aa32.44■■■□□ 2.78
VEGFA-230ENST00000640482 GRAPQ13588 217 aa32.44■■■□□ 2.78
VEGFA-230ENST00000640482 GRAPLQ8TC17 118 aaPredicted RBP32.44■■■□□ 2.78
VEGFA-230ENST00000640482 MYD88Q99836 296 aa32.44■■■□□ 2.78
VEGFA-230ENST00000640482 ZNF541Q9H0D2 1346 aa32.44■■■□□ 2.78
VEGFA-230ENST00000640482 IQCA1LA6NCM1 817 aa32.43■■■□□ 2.78
VEGFA-230ENST00000640482 L3MBTL3Q96JM7 780 aaPredicted RBP32.43■■■□□ 2.78
VEGFA-230ENST00000640482 SLC51AQ86UW1 340 aa32.42■■■□□ 2.78
VEGFA-230ENST00000640482 SP8Q8IXZ3 490 aa32.42■■■□□ 2.78
VEGFA-230ENST00000640482 DDX60Q8IY21 1712 aaKnown RBP32.41■■■□□ 2.78
VEGFA-230ENST00000640482 HSP90B1P14625 803 aaKnown RBP32.41■■■□□ 2.78
VEGFA-230ENST00000640482 SF3B3Q15393 1217 aaKnown RBP32.41■■■□□ 2.78
VEGFA-230ENST00000640482 RTL5Q5HYW3 569 aaPredicted RBP32.41■■■□□ 2.78
VEGFA-230ENST00000640482 TMC4Q7Z404 712 aa32.41■■■□□ 2.78
VEGFA-230ENST00000640482 LARGE2Q8N3Y3 721 aa32.41■■■□□ 2.78
VEGFA-230ENST00000640482 ZBTB38Q8NAP3 1195 aaPredicted RBP32.41■■■□□ 2.78
VEGFA-230ENST00000640482 CCDC191Q8NCU4 936 aa32.41■■■□□ 2.78
VEGFA-230ENST00000640482 FANCIQ9NVI1 1328 aa32.41■■■□□ 2.78
VEGFA-230ENST00000640482 CEP350Q5VT06 3117 aa32.41■■■□□ 2.78
VEGFA-230ENST00000640482 IRS4O14654 1257 aaPredicted RBP32.4■■■□□ 2.78
VEGFA-230ENST00000640482 SUPT20HQ8NEM7 779 aa32.4■■■□□ 2.78
VEGFA-230ENST00000640482 METTL22Q9BUU2 404 aaPredicted RBP32.4■■■□□ 2.78
VEGFA-230ENST00000640482 EIF6P56537 245 aaKnown RBP32.39■■■□□ 2.78
VEGFA-230ENST00000640482 VPS33BQ9H267 617 aa32.39■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms