RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ELOA3Q8NG57 546 aa10.43□□□□□ -0.74
VPS29-212ENST00000621131 ACIN1Q9UKV3 1341 aaKnown RBP10.42□□□□□ -0.74
VPS29-212ENST00000621131 TGFBR3LH3BV60 316 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 ATG7O95352 703 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 COL8A1P27658 744 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 SWI5Q1ZZU3 235 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 TNFRSF25Q93038 417 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 SUV39H2Q9H5I1 410 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 KLK14Q9P0G3 267 aa10.42□□□□□ -0.74
VPS29-212ENST00000621131 ITGB2P05107 769 aa10.41□□□□□ -0.74
VPS29-212ENST00000621131 RAB44Q7Z6P3 723 aaPredicted RBP10.41□□□□□ -0.74
VPS29-212ENST00000621131 STK32AQ8WU08 396 aa10.41□□□□□ -0.74
VPS29-212ENST00000621131 MYO19Q96H55 970 aa10.41□□□□□ -0.74
VPS29-212ENST00000621131 PRIMPOLQ96LW4 560 aa10.41□□□□□ -0.74
VPS29-212ENST00000621131 ARID3CA6NKF2 412 aa10.4□□□□□ -0.74
VPS29-212ENST00000621131 GNB5O14775 395 aa10.4□□□□□ -0.74
VPS29-212ENST00000621131 PLA2G4EQ3MJ16 856 aa10.4□□□□□ -0.74
VPS29-212ENST00000621131 SERPINA10Q9UK55 444 aa10.4□□□□□ -0.74
VPS29-212ENST00000621131 ALAS2P22557 587 aa10.39□□□□□ -0.75
VPS29-212ENST00000621131 FKBP5Q13451 457 aaPredicted RBP10.39□□□□□ -0.75
VPS29-212ENST00000621131 DGKZQ13574 1117 aa10.39□□□□□ -0.75
VPS29-212ENST00000621131 OCLNQ16625 522 aa10.39□□□□□ -0.75
VPS29-212ENST00000621131 C11orf91Q3C1V1 193 aa10.39□□□□□ -0.75
VPS29-212ENST00000621131 GPAT2Q6NUI2 795 aa10.39□□□□□ -0.75
VPS29-212ENST00000621131 KRBA1A5PL33 1030 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 IGHA1P01876 353 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 GRNP28799 593 aaKnown RBP10.38□□□□□ -0.75
VPS29-212ENST00000621131 INPP5BP32019 993 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 NEUROD1Q13562 356 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 VTI1AQ96AJ9 217 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 CCDC97Q96F63 343 aaPredicted RBP10.38□□□□□ -0.75
VPS29-212ENST00000621131 GSX2Q9BZM3 304 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS29-212ENST00000621131 LRFN2Q9ULH4 789 aa10.38□□□□□ -0.75
VPS29-212ENST00000621131 PRMT3O60678 531 aa10.37□□□□□ -0.75
VPS29-212ENST00000621131 ALYREFQ86V81 257 aaKnown RBP10.37□□□□□ -0.75
VPS29-212ENST00000621131 PBXIP1Q96AQ6 731 aa10.37□□□□□ -0.75
VPS29-212ENST00000621131 STARD13Q9Y3M8 1113 aa10.37□□□□□ -0.75
VPS29-212ENST00000621131 PIK3R2O00459 728 aa10.36□□□□□ -0.75
VPS29-212ENST00000621131 TMEM164Q5U3C3 297 aa10.36□□□□□ -0.75
VPS29-212ENST00000621131 BHMTQ93088 406 aa10.36□□□□□ -0.75
VPS29-212ENST00000621131 EFCC1Q9HA90 598 aa10.36□□□□□ -0.75
VPS29-212ENST00000621131 MICAL2O94851 1124 aa10.35□□□□□ -0.75
VPS29-212ENST00000621131 IDH3AP50213 366 aa10.35□□□□□ -0.75
VPS29-212ENST00000621131 COX20Q5RI15 118 aa10.35□□□□□ -0.75
VPS29-212ENST00000621131 TRIM11Q96F44 468 aa10.35□□□□□ -0.75
VPS29-212ENST00000621131 ADH7P40394 386 aa10.34□□□□□ -0.75
VPS29-212ENST00000621131 CCINQ13939 588 aa10.34□□□□□ -0.75
VPS29-212ENST00000621131 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
VPS29-212ENST00000621131 OPLAHO14841 1288 aa10.33□□□□□ -0.76
VPS29-212ENST00000621131 COL9A3Q14050 684 aaPredicted RBP10.33□□□□□ -0.76
VPS29-212ENST00000621131 IFT43Q96FT9 208 aa10.33□□□□□ -0.76
VPS29-212ENST00000621131 KRTAP4-6Q9BYQ5 205 aa10.33□□□□□ -0.76
VPS29-212ENST00000621131 C20orf204Q6ZNR8 217 aa10.32□□□□□ -0.76
VPS29-212ENST00000621131 MICALL1Q8N3F8 863 aa10.32□□□□□ -0.76
VPS29-212ENST00000621131 C11orf16Q9NQ32 467 aa10.32□□□□□ -0.76
VPS29-212ENST00000621131 NOP53Q9NZM5 478 aaKnown RBP10.32□□□□□ -0.76
VPS29-212ENST00000621131 CXXC1Q9P0U4 656 aaPredicted RBP10.32□□□□□ -0.76
VPS29-212ENST00000621131 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.32□□□□□ -0.76
VPS29-212ENST00000621131 M0R082 166 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 MSTNO14793 375 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 EPB42P16452 691 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 ARSDP51689 593 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 ZNF417Q8TAU3 575 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 CLP1Q92989 425 aaKnown RBP10.31□□□□□ -0.76
VPS29-212ENST00000621131 COL26A1Q96A83 441 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 ZNF587Q96SQ5 575 aaPredicted RBP10.31□□□□□ -0.76
VPS29-212ENST00000621131 SPOCK3Q9BQ16 436 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 PLVAPQ9BX97 442 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 SAP130Q9H0E3 1048 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 PRDM6Q9NQX0 595 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 SLAIN2Q9P270 581 aa10.31□□□□□ -0.76
VPS29-212ENST00000621131 ALBP02768 609 aa10.3□□□□□ -0.76
VPS29-212ENST00000621131 CAPN12Q6ZSI9 719 aa10.3□□□□□ -0.76
VPS29-212ENST00000621131 C8orf86Q6ZUL3 223 aa10.3□□□□□ -0.76
VPS29-212ENST00000621131 PROCP04070 461 aa10.29□□□□□ -0.76
VPS29-212ENST00000621131 PNMA5Q96PV4 448 aa10.29□□□□□ -0.76
VPS29-212ENST00000621131 UBE2OQ9C0C9 1292 aaKnown RBP10.29□□□□□ -0.76
VPS29-212ENST00000621131 C1orf115Q9H7X2 142 aa10.29□□□□□ -0.76
VPS29-212ENST00000621131 NFKB1P19838 968 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 C16orf46Q6P387 395 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 TREML1Q86YW5 311 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 CCDC82Q8N4S0 544 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 IGFLR1Q9H665 355 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 ZFATQ9P243 1243 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 SLC6A14Q9UN76 642 aa10.28□□□□□ -0.76
VPS29-212ENST00000621131 MAP3K6O95382 1288 aa10.27□□□□□ -0.77
VPS29-212ENST00000621131 TARSP26639 723 aaKnown RBP10.27□□□□□ -0.77
VPS29-212ENST00000621131 DNAJB12Q9NXW2 375 aaKnown RBP10.27□□□□□ -0.77
VPS29-212ENST00000621131 USP20Q9Y2K6 914 aa10.27□□□□□ -0.77
VPS29-212ENST00000621131 RTCBQ9Y3I0 505 aaKnown RBP10.27□□□□□ -0.77
VPS29-212ENST00000621131 NID1P14543 1247 aa10.26□□□□□ -0.77
VPS29-212ENST00000621131 TBC1D8BQ0IIM8 1120 aa10.26□□□□□ -0.77
VPS29-212ENST00000621131 FAM26DQ5JW98 314 aa10.26□□□□□ -0.77
VPS29-212ENST00000621131 ETFBKMTQ8IXQ9 262 aa10.26□□□□□ -0.77
VPS29-212ENST00000621131 C1QTNF9BB2RNN3 333 aa10.25□□□□□ -0.77
VPS29-212ENST00000621131 SASH3O75995 380 aa10.25□□□□□ -0.77
VPS29-212ENST00000621131 EGFRP00533 1210 aa10.25□□□□□ -0.77
VPS29-212ENST00000621131 BRD2P25440 801 aaKnown RBP10.25□□□□□ -0.77
VPS29-212ENST00000621131 NAA30Q147X3 362 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 799 ms