RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 IGHMBP2P38935 993 aaKnown RBP18.98■□□□□ 0.63
CPSF1-213ENST00000620219 PDIA6Q15084 440 aa18.97■□□□□ 0.63
CPSF1-213ENST00000620219 SYNE4Q8N205 404 aa18.97■□□□□ 0.63
CPSF1-213ENST00000620219 LARP6Q9BRS8 491 aaKnown RBP18.97■□□□□ 0.63
CPSF1-213ENST00000620219 HLFQ16534 295 aa18.96■□□□□ 0.63
CPSF1-213ENST00000620219 AFF2P51816 1311 aa18.96■□□□□ 0.63
CPSF1-213ENST00000620219 SPATA31A1Q5TZJ5 1347 aa18.96■□□□□ 0.63
CPSF1-213ENST00000620219 IDH1O75874 414 aaKnown RBP18.96■□□□□ 0.63
CPSF1-213ENST00000620219 ATP10DQ9P241 1426 aa18.96■□□□□ 0.63
CPSF1-213ENST00000620219 NBPF5PQ86XG9 351 aaPredicted RBP18.96■□□□□ 0.63
CPSF1-213ENST00000620219 EDC3Q96F86 508 aaKnown RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 DBNDD2Q9BQY9 259 aa18.95■□□□□ 0.62
CPSF1-213ENST00000620219 IQSEC3Q9UPP2 1182 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 OVOS2A0A0G2JMS6 1433 aa18.95■□□□□ 0.62
CPSF1-213ENST00000620219 RTCBQ9Y3I0 505 aaKnown RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 RABEP1Q15276 862 aa18.95■□□□□ 0.62
CPSF1-213ENST00000620219 EAF2Q96CJ1 260 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 UTP14AQ9BVJ6 771 aaKnown RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 MED1Q15648 1581 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-213ENST00000620219 G3V3G9 751 aa18.94■□□□□ 0.62
CPSF1-213ENST00000620219 DCAF8Q5TAQ9 597 aa18.94■□□□□ 0.62
CPSF1-213ENST00000620219 STK11IPQ8N1F8 1099 aa18.94■□□□□ 0.62
CPSF1-213ENST00000620219 PRPF40BQ6NWY9 871 aaKnown RBP18.94■□□□□ 0.62
CPSF1-213ENST00000620219 TMX4Q9H1E5 349 aaPredicted RBP18.94■□□□□ 0.62
CPSF1-213ENST00000620219 THRAP3Q9Y2W1 955 aaKnown RBP18.94■□□□□ 0.62
CPSF1-213ENST00000620219 JCADQ9P266 1359 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 IBTKQ9P2D0 1353 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-213ENST00000620219 FBXW7Q969H0 707 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 SETDB2Q96T68 719 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 ITGA6P23229 1130 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 RNF20Q5VTR2 975 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 SEPT12Q8IYM1 358 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 NWD1Q149M9 1564 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 ERBB4Q15303 1308 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 IL15P40933 162 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-213ENST00000620219 CHMP5Q9NZZ3 219 aa18.93■□□□□ 0.62
CPSF1-213ENST00000620219 ESYT1Q9BSJ8 1104 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 ABCF2Q9UG63 623 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 TRPC5Q9UL62 973 aaPredicted RBP18.92■□□□□ 0.62
CPSF1-213ENST00000620219 AKAP2Q9Y2D5 859 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 MAP3K15Q6ZN16 1313 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 LRRC24Q50LG9 513 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 LRRFIP1Q32MZ4 808 aaKnown RBP18.92■□□□□ 0.62
CPSF1-213ENST00000620219 EVI5LQ96CN4 794 aa18.92■□□□□ 0.62
CPSF1-213ENST00000620219 GIGYF2Q6Y7W6 1299 aaKnown RBP18.92■□□□□ 0.62
CPSF1-213ENST00000620219 PUS3Q9BZE2 481 aaKnown RBP18.92■□□□□ 0.62
CPSF1-213ENST00000620219 TLR7Q9NYK1 1049 aaKnown RBP18.92■□□□□ 0.62
CPSF1-213ENST00000620219 SLIT3O75094 1523 aa18.91■□□□□ 0.62
CPSF1-213ENST00000620219 HIP1O00291 1037 aa18.91■□□□□ 0.62
CPSF1-213ENST00000620219 CHMLP26374 656 aa18.91■□□□□ 0.62
CPSF1-213ENST00000620219 RGPD2P0DJD1 1756 aa18.91■□□□□ 0.62
CPSF1-213ENST00000620219 SH3TC1Q8TE82 1336 aa18.91■□□□□ 0.62
CPSF1-213ENST00000620219 K7ELQ4 463 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-213ENST00000620219 EYA2O00167 538 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 PALLDQ8WX93 1383 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 TRIM37O94972 964 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 ATP2B3Q16720 1220 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 TNNI3KQ59H18 835 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 JAKMIP1Q96N16 626 aaKnown RBP18.9■□□□□ 0.62
CPSF1-213ENST00000620219 BCL11BQ9C0K0 894 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-213ENST00000620219 FPGT-TNNI3KV9GXZ4 949 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 KLHL34Q8N239 644 aa18.9■□□□□ 0.62
CPSF1-213ENST00000620219 CYP19A1P11511 503 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-213ENST00000620219 SPATA31A5Q5VU36 1347 aa18.89■□□□□ 0.61
CPSF1-213ENST00000620219 SPATA31A7Q8IWB4 1347 aa18.89■□□□□ 0.61
CPSF1-213ENST00000620219 A0A1B0GUL7 405 aa18.89■□□□□ 0.61
CPSF1-213ENST00000620219 NKX1-1Q15270 411 aaPredicted RBP18.89■□□□□ 0.61
CPSF1-213ENST00000620219 DTNBO60941 627 aa18.88■□□□□ 0.61
CPSF1-213ENST00000620219 CCDC152Q4G0S7 254 aa18.88■□□□□ 0.61
CPSF1-213ENST00000620219 CD2BP2O95400 341 aaKnown RBP18.88■□□□□ 0.61
CPSF1-213ENST00000620219 TAF5LO75529 589 aa18.88■□□□□ 0.61
CPSF1-213ENST00000620219 IL6STP40189 918 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-213ENST00000620219 GBP4Q96PP9 640 aa18.88■□□□□ 0.61
CPSF1-213ENST00000620219 CHAF1AQ13111 956 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-213ENST00000620219 USP26Q9BXU7 913 aa18.88■□□□□ 0.61
CPSF1-213ENST00000620219 CASTP20810 708 aaKnown RBP18.87■□□□□ 0.61
CPSF1-213ENST00000620219 GJD4Q96KN9 370 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-213ENST00000620219 SASH1O94885 1247 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 FOSBP53539 338 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 VSIG10Q8N0Z9 540 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 GREM2Q9H772 168 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 POLA2Q14181 598 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 TFCP2L1Q9NZI6 479 aa18.87■□□□□ 0.61
CPSF1-213ENST00000620219 TRAPPC3LQ5T215 181 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 ZBTB38Q8NAP3 1195 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-213ENST00000620219 TTC41PQ6P2S7 1318 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 STK3Q13188 491 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 NMIQ13287 307 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-213ENST00000620219 TCEANC2Q96MN5 208 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 USPL1Q5W0Q7 1092 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 NLRP10Q86W26 655 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 LRP2BPQ9P2M1 347 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 PTPN12Q05209 780 aaKnown RBP18.86■□□□□ 0.61
CPSF1-213ENST00000620219 FAM227BQ96M60 508 aa18.86■□□□□ 0.61
CPSF1-213ENST00000620219 PDE8AO60658 829 aa18.85■□□□□ 0.61
CPSF1-213ENST00000620219 RBM25P49756 843 aaKnown RBP18.85■□□□□ 0.61
CPSF1-213ENST00000620219 SRP68Q9UHB9 627 aaKnown RBP18.85■□□□□ 0.61
CPSF1-213ENST00000620219 NLRP3Q96P20 1036 aa18.85■□□□□ 0.61
CPSF1-213ENST00000620219 ANKIB1Q9P2G1 1089 aa18.85■□□□□ 0.61
CPSF1-213ENST00000620219 ZNF219Q9P2Y4 722 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms