RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 RASSF2P50749 326 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC92Q53HC0 331 aaPredicted RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 UTP14CQ5TAP6 766 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 ZC3H6P61129 1189 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 TRIM68Q6AZZ1 485 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 SPATS2Q86XZ4 545 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 TBC1D31Q96DN5 1066 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 TMCO4Q5TGY1 634 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 MCUR1Q96AQ8 359 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 LARSQ9P2J5 1176 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 COG3Q96JB2 828 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 GIGYF1O75420 1035 aaPredicted RBP17.13■□□□□ 0.33
COL5A1-208ENST00000618395 PNMA8AQ86V59 439 aaPredicted RBP17.13■□□□□ 0.33
COL5A1-208ENST00000618395 HMGB1P1B2RPK0 211 aaPredicted RBP17.13■□□□□ 0.33
COL5A1-208ENST00000618395 SMC1BQ8NDV3 1235 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 VCX3AQ9NNX9 186 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 FAM177BA6PVY3 158 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 IRX4P78413 519 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 SEPT10Q9P0V9 454 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 FERMT1Q9BQL6 677 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 THEGQ9P2T0 379 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 GMNNO75496 209 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 DNAJC8O75937 253 aaPredicted RBP17.13■□□□□ 0.33
COL5A1-208ENST00000618395 ERCC6LQ2NKX8 1250 aa17.13■□□□□ 0.33
COL5A1-208ENST00000618395 NUCKS1Q9H1E3 243 aaKnown RBP17.13■□□□□ 0.33
COL5A1-208ENST00000618395 DNAI2Q9GZS0 605 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 COMMD10Q9Y6G5 202 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 ATP2A1O14983 1001 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 GKAP1Q5VSY0 366 aaPredicted RBP17.12■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC65Q8IXS2 484 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 TSPYL4Q9UJ04 414 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 PPP2R3AQ06190 1150 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 PHAXQ9H814 394 aaKnown RBP17.12■□□□□ 0.33
COL5A1-208ENST00000618395 SATB2Q9UPW6 733 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC186Q7Z3E2 898 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 BAIAP2L1Q9UHR4 511 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC144AA2RUR9 1427 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 ACTN2P35609 894 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC62Q6P9F0 684 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 FAM200AQ8TCP9 573 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.12■□□□□ 0.33
COL5A1-208ENST00000618395 RHOXF2BP0C7M4 288 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 SYT1P21579 422 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 RHOXF2Q9BQY4 288 aa17.12■□□□□ 0.33
COL5A1-208ENST00000618395 FSIP1Q8NA03 581 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 KLHDC4Q8TBB5 520 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 C1orf115Q9H7X2 142 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 OPHN1O60890 802 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 JAKMIP2Q96AA8 810 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 CAPN7Q9Y6W3 813 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 PRPHP41219 470 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 ANO6Q4KMQ2 910 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 EVC2Q86UK5 1308 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 KIF1CO43896 1103 aaKnown RBP17.11■□□□□ 0.33
COL5A1-208ENST00000618395 FERMT3Q86UX7 667 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 KRT86O43790 486 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 KANK3Q6NY19 840 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 CARMIL1Q5VZK9 1371 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 EVCP57679 992 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 FYB2Q5VWT5 728 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 PIK3R5Q8WYR1 880 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 PRPF31Q8WWY3 499 aaKnown RBP17.11■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC18Q5T9S5 1454 aa17.11■□□□□ 0.33
COL5A1-208ENST00000618395 ATP2A2P16615 1042 aaKnown RBP17.1■□□□□ 0.33
COL5A1-208ENST00000618395 MTIF2P46199 727 aaKnown RBP17.1■□□□□ 0.33
COL5A1-208ENST00000618395 MX1P20591 662 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 RASIP1Q5U651 963 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 SAMD1Q6SPF0 538 aaPredicted RBP17.1■□□□□ 0.33
COL5A1-208ENST00000618395 NOB1Q9ULX3 412 aaKnown RBP17.1■□□□□ 0.33
COL5A1-208ENST00000618395 HPDP32754 393 aaPredicted RBP17.1■□□□□ 0.33
COL5A1-208ENST00000618395 CDCA7LQ96GN5 454 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 KCNK9Q9NPC2 374 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 TXNDC9O14530 226 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 PPFIA3O75145 1194 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 RIPOR2Q9Y4F9 1068 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 ATAD2Q6PL18 1390 aa17.1■□□□□ 0.33
COL5A1-208ENST00000618395 HIP1RO75146 1068 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 GOLGA5Q8TBA6 731 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 NKIRAS1Q9NYS0 192 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 RRBP1Q9P2E9 1410 aaKnown RBP17.09■□□□□ 0.33
COL5A1-208ENST00000618395 SNCBQ16143 134 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 HSP90AA5PQ58FG0 334 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CCDC63Q8NA47 563 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 SEPT8Q92599 483 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CABS1Q96KC9 395 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CWC27Q6UX04 472 aaKnown RBP17.09■□□□□ 0.33
COL5A1-208ENST00000618395 RIC3Q7Z5B4 369 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 TRHP20396 242 aaPredicted RBP17.09■□□□□ 0.33
COL5A1-208ENST00000618395 NACAP1Q9BZK3 213 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CXorf38Q8TB03 319 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CTNNA3Q9UI47 895 aa17.09■□□□□ 0.33
COL5A1-208ENST00000618395 CFAP157Q5JU67 520 aa17.08■□□□□ 0.33
COL5A1-208ENST00000618395 CETN1Q12798 172 aa17.08■□□□□ 0.33
COL5A1-208ENST00000618395 ANKRD24Q8TF21 1146 aa17.08■□□□□ 0.33
COL5A1-208ENST00000618395 MYO1BO43795 1136 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 EVA1CP58658 441 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 TRPC3Q13507 836 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 GIMAP6Q6P9H5 292 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 PPP1R9BQ96SB3 815 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms