RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RPGRQ92834 1020 aaKnown RBP24.81■■□□□ 1.56
CCDC28A-203ENST00000617445 ZNF853P0CG23 659 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 FKBP4Q02790 459 aaKnown RBP eCLIP24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 GRIPAP1Q4V328 841 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 HDGFL1Q5TGJ6 251 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 XAGE3Q8WTP9 111 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 NECTIN2Q92692 538 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 UTP14AQ9BVJ6 771 aaKnown RBP24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 IFT57Q9NWB7 429 aa24.8■■□□□ 1.56
CCDC28A-203ENST00000617445 GNAI1P63096 354 aa24.79■■□□□ 1.56
CCDC28A-203ENST00000617445 KRT24Q2M2I5 525 aa24.79■■□□□ 1.56
CCDC28A-203ENST00000617445 SLC10A5Q5PT55 438 aa24.79■■□□□ 1.56
CCDC28A-203ENST00000617445 DBF4Q9UBU7 674 aaPredicted RBP24.79■■□□□ 1.56
CCDC28A-203ENST00000617445 AIMP1Q12904 312 aaKnown RBP24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 SMC1BQ8NDV3 1235 aa24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 RBM17Q96I25 401 aaKnown RBP24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 NLRP3Q96P20 1036 aa24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 CRAMP1Q96RY5 1269 aa24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 MBIPQ9NS73 344 aa24.78■■□□□ 1.56
CCDC28A-203ENST00000617445 TCIRG1Q13488 830 aa24.77■■□□□ 1.56
CCDC28A-203ENST00000617445 DUSP27Q5VZP5 1158 aa24.77■■□□□ 1.56
CCDC28A-203ENST00000617445 CHMP4AQ9BY43 222 aa24.77■■□□□ 1.56
CCDC28A-203ENST00000617445 HYPKQ9NX55 129 aa24.77■■□□□ 1.56
CCDC28A-203ENST00000617445 CHPF2Q9P2E5 772 aa24.77■■□□□ 1.56
CCDC28A-203ENST00000617445 WDR90Q96KV7 1748 aa24.76■■□□□ 1.55
CCDC28A-203ENST00000617445 ANKRD36CQ5JPF3 1778 aa24.76■■□□□ 1.55
CCDC28A-203ENST00000617445 ZNF316A6NFI3 1004 aaPredicted RBP24.76■■□□□ 1.55
CCDC28A-203ENST00000617445 PLBD2Q8NHP8 589 aa24.75■■□□□ 1.55
CCDC28A-203ENST00000617445 PSMD1Q99460 953 aa24.75■■□□□ 1.55
CCDC28A-203ENST00000617445 ANKRD13DQ6ZTN6 518 aa24.74■■□□□ 1.55
CCDC28A-203ENST00000617445 NLRP10Q86W26 655 aa24.74■■□□□ 1.55
CCDC28A-203ENST00000617445 POTECB2RU33 542 aa24.72■■□□□ 1.55
CCDC28A-203ENST00000617445 SYNE4Q8N205 404 aa24.72■■□□□ 1.55
CCDC28A-203ENST00000617445 ZNF277Q9NRM2 450 aaPredicted RBP24.72■■□□□ 1.55
CCDC28A-203ENST00000617445 OLFM4Q6UX06 510 aa24.71■■□□□ 1.55
CCDC28A-203ENST00000617445 TMX4Q9H1E5 349 aaPredicted RBP24.71■■□□□ 1.55
CCDC28A-203ENST00000617445 TRMT112Q9UI30 125 aaKnown RBP24.71■■□□□ 1.55
CCDC28A-203ENST00000617445 SH3TC1Q8TE82 1336 aa24.7■■□□□ 1.54
CCDC28A-203ENST00000617445 ANP32CO43423 234 aa24.7■■□□□ 1.54
CCDC28A-203ENST00000617445 IARSP41252 1262 aaKnown RBP24.7■■□□□ 1.54
CCDC28A-203ENST00000617445 CCDC27Q2M243 656 aa24.7■■□□□ 1.54
CCDC28A-203ENST00000617445 NCBP3Q53F19 620 aaKnown RBP24.7■■□□□ 1.54
CCDC28A-203ENST00000617445 SNED1Q8TER0 1413 aa24.69■■□□□ 1.54
CCDC28A-203ENST00000617445 DDNO94850 711 aaPredicted RBP24.69■■□□□ 1.54
CCDC28A-203ENST00000617445 IQCA1LA6NCM1 817 aa24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 PPEF1O14829 653 aaPredicted RBP24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 CCDC184Q52MB2 194 aa24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 C3orf67Q6ZVT6 689 aa24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 JDP2Q8WYK2 163 aa24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 L3MBTL3Q96JM7 780 aaPredicted RBP24.68■■□□□ 1.54
CCDC28A-203ENST00000617445 BBOX1O75936 387 aa24.67■■□□□ 1.54
CCDC28A-203ENST00000617445 TRIM28Q13263 835 aaKnown RBP24.67■■□□□ 1.54
CCDC28A-203ENST00000617445 ISCA1Q9BUE6 129 aa24.67■■□□□ 1.54
CCDC28A-203ENST00000617445 SCN4AP35499 1836 aa24.66■■□□□ 1.54
CCDC28A-203ENST00000617445 FZD9O00144 591 aa24.66■■□□□ 1.54
CCDC28A-203ENST00000617445 DNAJC5GQ8N7S2 189 aa24.66■■□□□ 1.54
CCDC28A-203ENST00000617445 VPS33BQ9H267 617 aa24.66■■□□□ 1.54
CCDC28A-203ENST00000617445 ATP6V0A2Q9Y487 856 aa24.66■■□□□ 1.54
CCDC28A-203ENST00000617445 HCLS1P14317 486 aaPredicted RBP24.65■■□□□ 1.54
CCDC28A-203ENST00000617445 MRS2Q9HD23 443 aa24.65■■□□□ 1.54
CCDC28A-203ENST00000617445 GOLGA2Q08379 1002 aa24.64■■□□□ 1.54
CCDC28A-203ENST00000617445 CCDC30Q5VVM6 783 aa24.64■■□□□ 1.54
CCDC28A-203ENST00000617445 DDX46Q7L014 1031 aaKnown RBP24.64■■□□□ 1.54
CCDC28A-203ENST00000617445 ELL2O00472 640 aaPredicted RBP24.63■■□□□ 1.53
CCDC28A-203ENST00000617445 TMC4Q7Z404 712 aa24.63■■□□□ 1.53
CCDC28A-203ENST00000617445 RIC3Q7Z5B4 369 aa24.63■■□□□ 1.53
CCDC28A-203ENST00000617445 WWC1Q8IX03 1113 aa24.63■■□□□ 1.53
CCDC28A-203ENST00000617445 C8orf58Q8NAV2 365 aa24.63■■□□□ 1.53
CCDC28A-203ENST00000617445 ABCC4O15439 1325 aa24.62■■□□□ 1.53
CCDC28A-203ENST00000617445 LAMB2P55268 1798 aa24.62■■□□□ 1.53
CCDC28A-203ENST00000617445 SP8Q8IXZ3 490 aa24.62■■□□□ 1.53
CCDC28A-203ENST00000617445 GPC2Q8N158 579 aa24.62■■□□□ 1.53
CCDC28A-203ENST00000617445 SUPT20HQ8NEM7 779 aa24.62■■□□□ 1.53
CCDC28A-203ENST00000617445 IL16Q14005 1332 aa24.61■■□□□ 1.53
CCDC28A-203ENST00000617445 HSP90B1P14625 803 aaKnown RBP24.61■■□□□ 1.53
CCDC28A-203ENST00000617445 ZNF541Q9H0D2 1346 aa24.61■■□□□ 1.53
CCDC28A-203ENST00000617445 ATP5J2-PTCD1G3V325 749 aa24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 TCERG1O14776 1098 aaKnown RBP24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 DDX58O95786 925 aaKnown RBP24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 EIF6P56537 245 aaKnown RBP24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 GRAPQ13588 217 aa24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 CHADLQ6NUI6 762 aa24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 LARGE2Q8N3Y3 721 aa24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 GRAPLQ8TC17 118 aaPredicted RBP24.6■■□□□ 1.53
CCDC28A-203ENST00000617445 SF3B3Q15393 1217 aaKnown RBP24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 FAM89AQ96GI7 184 aa24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 RTFDC1Q9BY42 306 aaPredicted RBP24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 TAF1DQ9H5J8 278 aaPredicted RBP24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 PHAXQ9H814 394 aaKnown RBP24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 HACL1Q9UJ83 578 aa24.59■■□□□ 1.53
CCDC28A-203ENST00000617445 LDHDQ86WU2 507 aa24.58■■□□□ 1.53
CCDC28A-203ENST00000617445 KLRG1Q96E93 195 aa24.58■■□□□ 1.53
CCDC28A-203ENST00000617445 PNMA8AQ86V59 439 aaPredicted RBP24.57■■□□□ 1.52
CCDC28A-203ENST00000617445 ZBTB38Q8NAP3 1195 aaPredicted RBP24.57■■□□□ 1.52
CCDC28A-203ENST00000617445 CCDC191Q8NCU4 936 aa24.57■■□□□ 1.52
CCDC28A-203ENST00000617445 DDX60Q8IY21 1712 aaKnown RBP24.56■■□□□ 1.52
CCDC28A-203ENST00000617445 DPP8Q6V1X1 898 aaPredicted RBP24.56■■□□□ 1.52
CCDC28A-203ENST00000617445 NIM1KQ8IY84 436 aa24.56■■□□□ 1.52
CCDC28A-203ENST00000617445 MPNDQ8N594 471 aa24.56■■□□□ 1.52
CCDC28A-203ENST00000617445 STK31Q9BXU1 1019 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms