RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 GRM8O00222 908 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 ATP8B2P98198 1209 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 SURF6O75683 361 aaKnown RBP12.17□□□□□ -0.46
GGA3-221ENST00000614198 NUTM1Q86Y26 1132 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 SEPT12Q8IYM1 358 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 LINS1Q8NG48 757 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 A0A087WZG4 1122 aa12.17□□□□□ -0.46
GGA3-221ENST00000614198 DDX58O95786 925 aaKnown RBP12.17□□□□□ -0.46
GGA3-221ENST00000614198 LOC102724428A0A0B4J2F2 783 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 MAP4K4O95819 1239 aaPredicted RBP12.16□□□□□ -0.46
GGA3-221ENST00000614198 SIK1P57059 783 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 OFD1O75665 1012 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 GSPT1P15170 499 aaKnown RBP12.16□□□□□ -0.46
GGA3-221ENST00000614198 PLEKHM2Q8IWE5 1019 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 GCC1Q96CN9 775 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 FOXD4L1Q9NU39 408 aa12.16□□□□□ -0.46
GGA3-221ENST00000614198 FAM89AQ96GI7 184 aa12.15□□□□□ -0.46
GGA3-221ENST00000614198 PLBD2Q8NHP8 589 aa12.15□□□□□ -0.46
GGA3-221ENST00000614198 ARFGEF2Q9Y6D5 1785 aa12.15□□□□□ -0.46
GGA3-221ENST00000614198 MYH14Q7Z406 1995 aaKnown RBP12.15□□□□□ -0.46
GGA3-221ENST00000614198 NEXNQ0ZGT2 675 aa12.15□□□□□ -0.46
GGA3-221ENST00000614198 CHMP3Q9Y3E7 222 aa12.15□□□□□ -0.46
GGA3-221ENST00000614198 PALLDQ8WX93 1383 aa12.14□□□□□ -0.47
GGA3-221ENST00000614198 CRKLP46109 303 aaKnown RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 INTS5Q6P9B9 1019 aaKnown RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 AFDNP55196 1824 aaKnown RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 ZHX1Q9UKY1 873 aaPredicted RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 LAMB4A4D0S4 1761 aa12.14□□□□□ -0.47
GGA3-221ENST00000614198 STARD3NLO95772 234 aa12.14□□□□□ -0.47
GGA3-221ENST00000614198 LINC00116Q8NCU8 138 aa12.14□□□□□ -0.47
GGA3-221ENST00000614198 BBXQ8WY36 941 aaPredicted RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 ZNF594Q96JF6 807 aaPredicted RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 CHMP4BQ9H444 224 aaKnown RBP12.14□□□□□ -0.47
GGA3-221ENST00000614198 ANP32BQ92688 251 aaKnown RBP12.13□□□□□ -0.47
GGA3-221ENST00000614198 CDCA7Q9BWT1 371 aaPredicted RBP12.13□□□□□ -0.47
GGA3-221ENST00000614198 SSH3Q8TE77 659 aa12.13□□□□□ -0.47
GGA3-221ENST00000614198 PXDNLA1KZ92 1463 aa12.13□□□□□ -0.47
GGA3-221ENST00000614198 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.12□□□□□ -0.47
GGA3-221ENST00000614198 CCDC24Q8N4L8 307 aa12.12□□□□□ -0.47
GGA3-221ENST00000614198 ZSCAN30Q86W11 494 aa12.12□□□□□ -0.47
GGA3-221ENST00000614198 PPP1R9BQ96SB3 815 aa12.12□□□□□ -0.47
GGA3-221ENST00000614198 GAS2L3Q86XJ1 694 aa12.12□□□□□ -0.47
GGA3-221ENST00000614198 HSCBQ8IWL3 235 aa12.12□□□□□ -0.47
GGA3-221ENST00000614198 SMAP1Q8IYB5 467 aaPredicted RBP12.12□□□□□ -0.47
GGA3-221ENST00000614198 ALDH1L1O75891 902 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 CCDC173Q0VFZ6 552 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 POLA2Q14181 598 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 LMBR1LQ6UX01 489 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 TJP1Q07157 1748 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 HMMRO75330 724 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 TRIM37O94972 964 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 OS9Q13438 667 aaPredicted RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 DZIP3Q86Y13 1208 aaKnown RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 TLR7Q9NYK1 1049 aaKnown RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 NDUFB9Q9Y6M9 179 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 PLEKHG2Q9H7P9 1386 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 N4BP2Q86UW6 1770 aaPredicted RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 NCLP19338 710 aaKnown RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 CASP7P55210 303 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 BICDL1Q6ZP65 573 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 LRRCC1Q9C099 1032 aa12.11□□□□□ -0.47
GGA3-221ENST00000614198 TRPC5Q9UL62 973 aaPredicted RBP12.11□□□□□ -0.47
GGA3-221ENST00000614198 PRDM10Q9NQV6 1147 aa12.1□□□□□ -0.47
GGA3-221ENST00000614198 IBTKQ9P2D0 1353 aaPredicted RBP12.1□□□□□ -0.47
GGA3-221ENST00000614198 PHF14O94880 888 aa12.1□□□□□ -0.47
GGA3-221ENST00000614198 RHPN1Q8TCX5 695 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 CCDC8Q9H0W5 538 aaPredicted RBP12.09□□□□□ -0.47
GGA3-221ENST00000614198 UBN2Q6ZU65 1347 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 SASH1O94885 1247 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 FOXO4P98177 505 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 SKOR2Q2VWA4 1001 aaPredicted RBP12.09□□□□□ -0.47
GGA3-221ENST00000614198 LRRC4BQ9NT99 713 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 CWC25Q9NXE8 425 aaPredicted RBP12.09□□□□□ -0.47
GGA3-221ENST00000614198 NUP188Q5SRE5 1749 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 KIF6Q6ZMV9 814 aa12.09□□□□□ -0.47
GGA3-221ENST00000614198 SRP68Q9UHB9 627 aaKnown RBP12.09□□□□□ -0.47
GGA3-221ENST00000614198 TCIRG1Q13488 830 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 MTERF4Q7Z6M4 381 aaKnown RBP12.08□□□□□ -0.48
GGA3-221ENST00000614198 CHMP4AQ9BY43 222 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 PUS3Q9BZE2 481 aaKnown RBP12.08□□□□□ -0.48
GGA3-221ENST00000614198 CCDC87Q9NVE4 849 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 SDSP20132 328 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 DDIT3P35638 169 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 PDE1AP54750 535 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 MAP3K15Q6ZN16 1313 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 HCLS1P14317 486 aaPredicted RBP12.08□□□□□ -0.48
GGA3-221ENST00000614198 C22orf23Q9BZE7 217 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 FAM13BQ9NYF5 915 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 UTYO14607 1347 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 BRWD3Q6RI45 1802 aa12.08□□□□□ -0.48
GGA3-221ENST00000614198 ATRNO75882 1429 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 CHGBP05060 677 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 PTMSP20962 102 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 EIF5P55010 431 aaKnown RBP12.07□□□□□ -0.48
GGA3-221ENST00000614198 LRRC24Q50LG9 513 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 TBC1D9Q6ZT07 1266 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 SLC51AQ86UW1 340 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 BTAF1O14981 1849 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 H7C1W4 665 aa12.07□□□□□ -0.48
GGA3-221ENST00000614198 TTC22Q5TAA0 569 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms