RNA–Protein interactions for RNA: ENST00000610454.4

SENP3-209, Transcript of SUMO specific peptidase 3, humanhuman

TSL 3

Gene SENP3, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-209ENST00000610454 TWISTNBQ3B726 338 aaPredicted RBP17.24■□□□□ 0.35
SENP3-209ENST00000610454 C9orf131Q5VYM1 1079 aa17.24■□□□□ 0.35
SENP3-209ENST00000610454 RIC3Q7Z5B4 369 aa17.24■□□□□ 0.35
SENP3-209ENST00000610454 FANCIQ9NVI1 1328 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 RIC1Q4ADV7 1423 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 KLRG2A4D1S0 409 aaPredicted RBP17.23■□□□□ 0.35
SENP3-209ENST00000610454 ALDH1B1P30837 517 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 RASSF7Q02833 373 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 TSPYL6Q8N831 410 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 MYH16Q9H6N6 1097 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 TRMT112Q9UI30 125 aaKnown RBP17.23■□□□□ 0.35
SENP3-209ENST00000610454 SLX4Q8IY92 1834 aa17.23■□□□□ 0.35
SENP3-209ENST00000610454 SBF1O95248 1867 aa17.22■□□□□ 0.35
SENP3-209ENST00000610454 CCER2I3L3R5 266 aa17.22■□□□□ 0.35
SENP3-209ENST00000610454 NLRP10Q86W26 655 aa17.22■□□□□ 0.35
SENP3-209ENST00000610454 NLRP3Q96P20 1036 aa17.22■□□□□ 0.35
SENP3-209ENST00000610454 LMNB1P20700 586 aa17.21■□□□□ 0.35
SENP3-209ENST00000610454 PHAXQ9H814 394 aaKnown RBP17.21■□□□□ 0.35
SENP3-209ENST00000610454 SH3TC1Q8TE82 1336 aa17.21■□□□□ 0.34
SENP3-209ENST00000610454 CCDC88AQ3V6T2 1871 aa17.2■□□□□ 0.34
SENP3-209ENST00000610454 CRY2Q49AN0 593 aa17.2■□□□□ 0.34
SENP3-209ENST00000610454 CCDC93Q567U6 631 aa17.2■□□□□ 0.34
SENP3-209ENST00000610454 RBM17Q96I25 401 aaKnown RBP17.2■□□□□ 0.34
SENP3-209ENST00000610454 FER1L6Q2WGJ9 1857 aa17.2■□□□□ 0.34
SENP3-209ENST00000610454 ATP5J2-PTCD1G3V325 749 aa17.19■□□□□ 0.34
SENP3-209ENST00000610454 TMX4Q9H1E5 349 aaPredicted RBP17.19■□□□□ 0.34
SENP3-209ENST00000610454 TAOK3Q9H2K8 898 aa17.19■□□□□ 0.34
SENP3-209ENST00000610454 NFKBIEO00221 500 aa17.18■□□□□ 0.34
SENP3-209ENST00000610454 TCERG1O14776 1098 aaKnown RBP17.18■□□□□ 0.34
SENP3-209ENST00000610454 CACNA1FO60840 1977 aa17.18■□□□□ 0.34
SENP3-209ENST00000610454 TIAM2Q8IVF5 1701 aa17.18■□□□□ 0.34
SENP3-209ENST00000610454 ZC3H4Q9UPT8 1303 aaKnown RBP17.18■□□□□ 0.34
SENP3-209ENST00000610454 SLC4A2P04920 1241 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 EXOSC9Q06265 439 aaKnown RBP17.17■□□□□ 0.34
SENP3-209ENST00000610454 SLC10A5Q5PT55 438 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 DIEXFQ68CQ4 756 aaKnown RBP17.17■□□□□ 0.34
SENP3-209ENST00000610454 ZNF428Q96B54 188 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 MYD88Q99836 296 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 ISCA1Q9BUE6 129 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 KDM2BQ8NHM5 1336 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 LTBP3Q9NS15 1303 aa17.17■□□□□ 0.34
SENP3-209ENST00000610454 HCLS1P14317 486 aaPredicted RBP17.16■□□□□ 0.34
SENP3-209ENST00000610454 NEXNQ0ZGT2 675 aa17.16■□□□□ 0.34
SENP3-209ENST00000610454 RTKN2Q8IZC4 609 aa17.16■□□□□ 0.34
SENP3-209ENST00000610454 CRAMP1Q96RY5 1269 aa17.16■□□□□ 0.34
SENP3-209ENST00000610454 LAMB2P55268 1798 aa17.15■□□□□ 0.34
SENP3-209ENST00000610454 HSP90B1P14625 803 aaKnown RBP17.15■□□□□ 0.34
SENP3-209ENST00000610454 HOXA10P31260 410 aaPredicted RBP17.15■□□□□ 0.34
SENP3-209ENST00000610454 TRIM28Q13263 835 aaKnown RBP17.15■□□□□ 0.34
SENP3-209ENST00000610454 MAP3K2Q9Y2U5 619 aa17.15■□□□□ 0.34
SENP3-209ENST00000610454 DICER1Q9UPY3 1922 aaKnown RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 PPEF1O14829 653 aaPredicted RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 RTL5Q5HYW3 569 aaPredicted RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 CC2D2BQ6DHV5 1058 aa17.14■□□□□ 0.33
SENP3-209ENST00000610454 KSR2Q6VAB6 950 aa17.14■□□□□ 0.33
SENP3-209ENST00000610454 DDX46Q7L014 1031 aaKnown RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 CCDC191Q8NCU4 936 aa17.14■□□□□ 0.33
SENP3-209ENST00000610454 FAM89AQ96GI7 184 aa17.14■□□□□ 0.33
SENP3-209ENST00000610454 METTL22Q9BUU2 404 aaPredicted RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.33
SENP3-209ENST00000610454 DDX60Q8IY21 1712 aaKnown RBP17.13■□□□□ 0.33
SENP3-209ENST00000610454 PI4KAP2A4QPH2 592 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 VAMP4O75379 141 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 FKBP4Q02790 459 aaKnown RBP eCLIP17.13■□□□□ 0.33
SENP3-209ENST00000610454 FKBP5Q13451 457 aaPredicted RBP17.13■□□□□ 0.33
SENP3-209ENST00000610454 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 C3orf67Q6ZVT6 689 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 SYNE4Q8N205 404 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 PI4KAP1Q8N8J0 262 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 C7orf43Q8WVR3 580 aa17.13■□□□□ 0.33
SENP3-209ENST00000610454 CWC25Q9NXE8 425 aaPredicted RBP17.13■□□□□ 0.33
SENP3-209ENST00000610454 E9PSI1 815 aa17.12■□□□□ 0.33
SENP3-209ENST00000610454 IRS4O14654 1257 aaPredicted RBP17.12■□□□□ 0.33
SENP3-209ENST00000610454 C1QTNF8P60827 252 aa17.12■□□□□ 0.33
SENP3-209ENST00000610454 FLIIQ13045 1269 aa17.12■□□□□ 0.33
SENP3-209ENST00000610454 ZBTB38Q8NAP3 1195 aaPredicted RBP17.12■□□□□ 0.33
SENP3-209ENST00000610454 ZNF521Q96K83 1311 aa17.12■□□□□ 0.33
SENP3-209ENST00000610454 DPY19L2Q6NUT2 758 aa17.11■□□□□ 0.33
SENP3-209ENST00000610454 C16orf71Q8IYS4 520 aaPredicted RBP17.11■□□□□ 0.33
SENP3-209ENST00000610454 ABCC4O15439 1325 aa17.11■□□□□ 0.33
SENP3-209ENST00000610454 PRELPP51888 382 aa17.1■□□□□ 0.33
SENP3-209ENST00000610454 OLFM4Q6UX06 510 aa17.1■□□□□ 0.33
SENP3-209ENST00000610454 G2E3Q7L622 706 aa17.1■□□□□ 0.33
SENP3-209ENST00000610454 BBOX1O75936 387 aa17.09■□□□□ 0.33
SENP3-209ENST00000610454 PCCAP05165 728 aaPredicted RBP17.09■□□□□ 0.33
SENP3-209ENST00000610454 GRAPQ13588 217 aa17.09■□□□□ 0.33
SENP3-209ENST00000610454 GRAPLQ8TC17 118 aaPredicted RBP17.09■□□□□ 0.33
SENP3-209ENST00000610454 PSMD1Q99460 953 aa17.09■□□□□ 0.33
SENP3-209ENST00000610454 NMRK2Q9NPI5 230 aa17.09■□□□□ 0.33
SENP3-209ENST00000610454 ZNF277Q9NRM2 450 aaPredicted RBP17.09■□□□□ 0.33
SENP3-209ENST00000610454 GLTPD2A6NH11 291 aa17.08■□□□□ 0.32
SENP3-209ENST00000610454 TMC4Q7Z404 712 aa17.08■□□□□ 0.32
SENP3-209ENST00000610454 DNAAF4Q8WXU2 420 aa17.08■□□□□ 0.32
SENP3-209ENST00000610454 ATP6V0A2Q9Y487 856 aa17.08■□□□□ 0.32
SENP3-209ENST00000610454 KIF3CO14782 793 aa17.07■□□□□ 0.32
SENP3-209ENST00000610454 IARSP41252 1262 aaKnown RBP17.07■□□□□ 0.32
SENP3-209ENST00000610454 SF3B3Q15393 1217 aaKnown RBP17.07■□□□□ 0.32
SENP3-209ENST00000610454 MIER1Q8N108 512 aa17.07■□□□□ 0.32
SENP3-209ENST00000610454 JDP2Q8WYK2 163 aa17.07■□□□□ 0.32
SENP3-209ENST00000610454 TAF1P21675 1872 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms