RNA–Protein interactions for RNA: ENST00000601919.5

SSBP4-212, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-212ENST00000601919 NLRP10Q86W26 655 aa23.25■■□□□ 1.31
SSBP4-212ENST00000601919 NIP7Q9Y221 180 aaKnown RBP eCLIP23.25■■□□□ 1.31
SSBP4-212ENST00000601919 LRRFIP2Q9Y608 721 aaKnown RBP23.25■■□□□ 1.31
SSBP4-212ENST00000601919 H7C1W4 665 aa23.24■■□□□ 1.31
SSBP4-212ENST00000601919 HMMRO75330 724 aa23.24■■□□□ 1.31
SSBP4-212ENST00000601919 PPP1R42Q7Z4L9 355 aa23.24■■□□□ 1.31
SSBP4-212ENST00000601919 QSER1Q2KHR3 1735 aa23.24■■□□□ 1.31
SSBP4-212ENST00000601919 TUBGCP6Q96RT7 1819 aa23.24■■□□□ 1.31
SSBP4-212ENST00000601919 PCCAP05165 728 aaPredicted RBP23.23■■□□□ 1.31
SSBP4-212ENST00000601919 HDAC1Q13547 482 aaPredicted RBP23.23■■□□□ 1.31
SSBP4-212ENST00000601919 UBE3BQ7Z3V4 1068 aa23.23■■□□□ 1.31
SSBP4-212ENST00000601919 AMIGO3Q86WK7 504 aa23.23■■□□□ 1.31
SSBP4-212ENST00000601919 ANKRD44Q8N8A2 993 aa23.23■■□□□ 1.31
SSBP4-212ENST00000601919 ZBTB38Q8NAP3 1195 aaPredicted RBP23.23■■□□□ 1.31
SSBP4-212ENST00000601919 SRP68Q9UHB9 627 aaKnown RBP23.23■■□□□ 1.31
SSBP4-212ENST00000601919 HSP90B1P14625 803 aaKnown RBP23.22■■□□□ 1.31
SSBP4-212ENST00000601919 CEP85Q6P2H3 762 aa23.22■■□□□ 1.31
SSBP4-212ENST00000601919 SMIM5Q71RC9 77 aa23.22■■□□□ 1.31
SSBP4-212ENST00000601919 CENPQQ7L2Z9 268 aaPredicted RBP23.22■■□□□ 1.31
SSBP4-212ENST00000601919 SLC15A2Q16348 729 aa23.21■■□□□ 1.31
SSBP4-212ENST00000601919 SETDB2Q96T68 719 aa23.21■■□□□ 1.31
SSBP4-212ENST00000601919 UTP14AQ9BVJ6 771 aaKnown RBP23.21■■□□□ 1.31
SSBP4-212ENST00000601919 BCL2L12Q9HB09 334 aa23.21■■□□□ 1.31
SSBP4-212ENST00000601919 TRMT112Q9UI30 125 aaKnown RBP23.21■■□□□ 1.31
SSBP4-212ENST00000601919 UBN2Q6ZU65 1347 aa23.2■■□□□ 1.3
SSBP4-212ENST00000601919 CDHR2Q9BYE9 1310 aa23.19■■□□□ 1.3
SSBP4-212ENST00000601919 CASP7P55210 303 aa23.19■■□□□ 1.3
SSBP4-212ENST00000601919 ATP8B2P98198 1209 aa23.19■■□□□ 1.3
SSBP4-212ENST00000601919 UPF1Q92900 1129 aaKnown RBP eCLIP23.19■■□□□ 1.3
SSBP4-212ENST00000601919 SUCLG2Q96I99 432 aa23.19■■□□□ 1.3
SSBP4-212ENST00000601919 NYXQ9GZU5 481 aa23.19■■□□□ 1.3
SSBP4-212ENST00000601919 SH3TC1Q8TE82 1336 aa23.18■■□□□ 1.3
SSBP4-212ENST00000601919 MSH5O43196 834 aa23.18■■□□□ 1.3
SSBP4-212ENST00000601919 TBC1D9BQ66K14 1250 aa23.18■■□□□ 1.3
SSBP4-212ENST00000601919 COL24A1Q17RW2 1714 aa23.17■■□□□ 1.3
SSBP4-212ENST00000601919 MTX1Q13505 466 aa23.17■■□□□ 1.3
SSBP4-212ENST00000601919 SUSD4Q5VX71 490 aa23.17■■□□□ 1.3
SSBP4-212ENST00000601919 COL23A1Q86Y22 540 aaPredicted RBP23.17■■□□□ 1.3
SSBP4-212ENST00000601919 PNPLA7Q6ZV29 1317 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 IGHDP01880 384 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 GYS1P13807 737 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 BICDL1Q6ZP65 573 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 FAM89AQ96GI7 184 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 PLA2G12BQ9BX93 195 aa23.16■■□□□ 1.3
SSBP4-212ENST00000601919 BICC1Q9H694 974 aaKnown RBP23.16■■□□□ 1.3
SSBP4-212ENST00000601919 ANO8Q9HCE9 1232 aaPredicted RBP23.16■■□□□ 1.3
SSBP4-212ENST00000601919 CARMIL3Q8ND23 1372 aa23.15■■□□□ 1.3
SSBP4-212ENST00000601919 KDM2BQ8NHM5 1336 aa23.15■■□□□ 1.3
SSBP4-212ENST00000601919 RTL5Q5HYW3 569 aaPredicted RBP23.15■■□□□ 1.3
SSBP4-212ENST00000601919 SIRT2Q8IXJ6 389 aa23.15■■□□□ 1.3
SSBP4-212ENST00000601919 NLGN1Q8N2Q7 840 aa23.15■■□□□ 1.3
SSBP4-212ENST00000601919 JARID2Q92833 1246 aaPredicted RBP23.15■■□□□ 1.3
SSBP4-212ENST00000601919 MYH3P11055 1940 aa23.15■■□□□ 1.3
SSBP4-212ENST00000601919 SRGAP3O43295 1099 aa23.14■■□□□ 1.29
SSBP4-212ENST00000601919 GTF2E1P29083 439 aaPredicted RBP23.14■■□□□ 1.29
SSBP4-212ENST00000601919 GCC1Q96CN9 775 aa23.14■■□□□ 1.29
SSBP4-212ENST00000601919 KAZALD1Q96I82 304 aa23.14■■□□□ 1.29
SSBP4-212ENST00000601919 IRS4O14654 1257 aaPredicted RBP23.13■■□□□ 1.29
SSBP4-212ENST00000601919 NTSR2O95665 410 aa23.13■■□□□ 1.29
SSBP4-212ENST00000601919 RABL6Q3YEC7 729 aaPredicted RBP23.13■■□□□ 1.29
SSBP4-212ENST00000601919 TPTE2Q6XPS3 522 aa23.13■■□□□ 1.29
SSBP4-212ENST00000601919 NBPF5PQ86XG9 351 aaPredicted RBP23.13■■□□□ 1.29
SSBP4-212ENST00000601919 SSH3Q8TE77 659 aa23.13■■□□□ 1.29
SSBP4-212ENST00000601919 LAMB2P55268 1798 aa23.12■■□□□ 1.29
SSBP4-212ENST00000601919 FAM177BA6PVY3 158 aa23.12■■□□□ 1.29
SSBP4-212ENST00000601919 PDE8AO60658 829 aa23.12■■□□□ 1.29
SSBP4-212ENST00000601919 NFIXQ14938 502 aa23.12■■□□□ 1.29
SSBP4-212ENST00000601919 PNMA6EA0A0J9YXQ4 647 aa23.11■■□□□ 1.29
SSBP4-212ENST00000601919 NPHP1O15259 732 aa23.11■■□□□ 1.29
SSBP4-212ENST00000601919 FOXO4P98177 505 aa23.11■■□□□ 1.29
SSBP4-212ENST00000601919 POLA2Q14181 598 aa23.11■■□□□ 1.29
SSBP4-212ENST00000601919 EPHA10Q5JZY3 1008 aa23.1■■□□□ 1.29
SSBP4-212ENST00000601919 SMC5Q8IY18 1101 aa23.1■■□□□ 1.29
SSBP4-212ENST00000601919 DCTPP1Q9H773 170 aa23.1■■□□□ 1.29
SSBP4-212ENST00000601919 TM4SF1P30408 202 aa23.09■■□□□ 1.29
SSBP4-212ENST00000601919 LMBR1LQ6UX01 489 aa23.09■■□□□ 1.29
SSBP4-212ENST00000601919 DDX60Q8IY21 1712 aaKnown RBP23.08■■□□□ 1.29
SSBP4-212ENST00000601919 HSP90AB4PQ58FF6 505 aa23.08■■□□□ 1.29
SSBP4-212ENST00000601919 ZBTB47Q9UFB7 747 aaPredicted RBP23.08■■□□□ 1.29
SSBP4-212ENST00000601919 CHMP3Q9Y3E7 222 aa23.08■■□□□ 1.29
SSBP4-212ENST00000601919 CTSWP56202 376 aa23.07■■□□□ 1.28
SSBP4-212ENST00000601919 SLC10A5Q5PT55 438 aa23.07■■□□□ 1.28
SSBP4-212ENST00000601919 NUTM1Q86Y26 1132 aa23.07■■□□□ 1.28
SSBP4-212ENST00000601919 CNBD1Q8NA66 436 aa23.07■■□□□ 1.28
SSBP4-212ENST00000601919 CSF1RP07333 972 aa23.06■■□□□ 1.28
SSBP4-212ENST00000601919 ERFEQ4G0M1 354 aa23.06■■□□□ 1.28
SSBP4-212ENST00000601919 SYNE4Q8N205 404 aa23.06■■□□□ 1.28
SSBP4-212ENST00000601919 SLC16A10Q8TF71 515 aa23.06■■□□□ 1.28
SSBP4-212ENST00000601919 HCLS1P14317 486 aaPredicted RBP23.05■■□□□ 1.28
SSBP4-212ENST00000601919 ST5P78524 1137 aa23.05■■□□□ 1.28
SSBP4-212ENST00000601919 CCDC57Q2TAC2 916 aa23.05■■□□□ 1.28
SSBP4-212ENST00000601919 RAB11FIP3O75154 756 aa23.04■■□□□ 1.28
SSBP4-212ENST00000601919 SURF6O75683 361 aaKnown RBP23.04■■□□□ 1.28
SSBP4-212ENST00000601919 SERPINB2P05120 415 aa23.04■■□□□ 1.28
SSBP4-212ENST00000601919 CCDC152Q4G0S7 254 aa23.04■■□□□ 1.28
SSBP4-212ENST00000601919 TTLL11Q8NHH1 800 aa23.04■■□□□ 1.28
SSBP4-212ENST00000601919 NOP58Q9Y2X3 529 aaKnown RBP23.04■■□□□ 1.28
SSBP4-212ENST00000601919 PARP3Q9Y6F1 533 aa23.04■■□□□ 1.28
SSBP4-212ENST00000601919 POLRMTO00411 1230 aaKnown RBP23.03■■□□□ 1.28
SSBP4-212ENST00000601919 IFIT5Q13325 482 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms