RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ZNF521Q96K83 1311 aa24.79■■□□□ 1.56
UPF1-212ENST00000601689 VAMP4O75379 141 aa24.78■■□□□ 1.56
UPF1-212ENST00000601689 HSP90B1P14625 803 aaKnown RBP24.78■■□□□ 1.56
UPF1-212ENST00000601689 NEXNQ0ZGT2 675 aa24.78■■□□□ 1.56
UPF1-212ENST00000601689 SOGA3Q5TF21 947 aa24.78■■□□□ 1.56
UPF1-212ENST00000601689 NLRP10Q86W26 655 aa24.78■■□□□ 1.56
UPF1-212ENST00000601689 RPGRQ92834 1020 aaKnown RBP24.78■■□□□ 1.56
UPF1-212ENST00000601689 NTSR2O95665 410 aa24.77■■□□□ 1.56
UPF1-212ENST00000601689 SH3TC1Q8TE82 1336 aa24.77■■□□□ 1.56
UPF1-212ENST00000601689 ARFGEF2Q9Y6D5 1785 aa24.76■■□□□ 1.55
UPF1-212ENST00000601689 KLRG2A4D1S0 409 aaPredicted RBP24.76■■□□□ 1.55
UPF1-212ENST00000601689 TCERG1O14776 1098 aaKnown RBP24.76■■□□□ 1.55
UPF1-212ENST00000601689 SPINK5Q9NQ38 1064 aaPredicted RBP24.76■■□□□ 1.55
UPF1-212ENST00000601689 KSR2Q6VAB6 950 aa24.75■■□□□ 1.55
UPF1-212ENST00000601689 TMX4Q9H1E5 349 aaPredicted RBP24.75■■□□□ 1.55
UPF1-212ENST00000601689 ATP5J2-PTCD1G3V325 749 aa24.74■■□□□ 1.55
UPF1-212ENST00000601689 TRIM28Q13263 835 aaKnown RBP24.74■■□□□ 1.55
UPF1-212ENST00000601689 RBM17Q96I25 401 aaKnown RBP24.74■■□□□ 1.55
UPF1-212ENST00000601689 MYD88Q99836 296 aa24.74■■□□□ 1.55
UPF1-212ENST00000601689 ISCA1Q9BUE6 129 aa24.74■■□□□ 1.55
UPF1-212ENST00000601689 RIC1Q4ADV7 1423 aa24.74■■□□□ 1.55
UPF1-212ENST00000601689 CACNA1SQ13698 1873 aa24.73■■□□□ 1.55
UPF1-212ENST00000601689 FKBP5Q13451 457 aaPredicted RBP24.73■■□□□ 1.55
UPF1-212ENST00000601689 SLC10A5Q5PT55 438 aa24.73■■□□□ 1.55
UPF1-212ENST00000601689 METTL22Q9BUU2 404 aaPredicted RBP24.73■■□□□ 1.55
UPF1-212ENST00000601689 MAP3K2Q9Y2U5 619 aa24.73■■□□□ 1.55
UPF1-212ENST00000601689 COL11A2P13942 1736 aaPredicted RBP24.72■■□□□ 1.55
UPF1-212ENST00000601689 PI4KAP2A4QPH2 592 aa24.72■■□□□ 1.55
UPF1-212ENST00000601689 SLFN5Q08AF3 891 aa24.72■■□□□ 1.55
UPF1-212ENST00000601689 FLIIQ13045 1269 aa24.72■■□□□ 1.55
UPF1-212ENST00000601689 PRPF40BQ6NWY9 871 aaKnown RBP24.72■■□□□ 1.55
UPF1-212ENST00000601689 PI4KAP1Q8N8J0 262 aa24.72■■□□□ 1.55
UPF1-212ENST00000601689 CCDC191Q8NCU4 936 aa24.72■■□□□ 1.55
UPF1-212ENST00000601689 ABCC12Q96J65 1359 aa24.71■■□□□ 1.55
UPF1-212ENST00000601689 C21orf2O43822 256 aa24.71■■□□□ 1.55
UPF1-212ENST00000601689 ZNF428Q96B54 188 aa24.71■■□□□ 1.55
UPF1-212ENST00000601689 CWC25Q9NXE8 425 aaPredicted RBP24.71■■□□□ 1.55
UPF1-212ENST00000601689 CRY2Q49AN0 593 aa24.7■■□□□ 1.54
UPF1-212ENST00000601689 ZNF219Q9P2Y4 722 aaPredicted RBP24.7■■□□□ 1.54
UPF1-212ENST00000601689 ZBTB38Q8NAP3 1195 aaPredicted RBP24.68■■□□□ 1.54
UPF1-212ENST00000601689 HNRNPUQ00839 825 aaKnown RBP eCLIP24.67■■□□□ 1.54
UPF1-212ENST00000601689 CCDC93Q567U6 631 aa24.67■■□□□ 1.54
UPF1-212ENST00000601689 CC2D2BQ6DHV5 1058 aa24.67■■□□□ 1.54
UPF1-212ENST00000601689 DDX46Q7L014 1031 aaKnown RBP24.67■■□□□ 1.54
UPF1-212ENST00000601689 FAM89AQ96GI7 184 aa24.67■■□□□ 1.54
UPF1-212ENST00000601689 CRAMP1Q96RY5 1269 aa24.67■■□□□ 1.54
UPF1-212ENST00000601689 SLX4Q8IY92 1834 aa24.67■■□□□ 1.54
UPF1-212ENST00000601689 CT47B1P0C2W7 299 aaPredicted RBP24.66■■□□□ 1.54
UPF1-212ENST00000601689 HCLS1P14317 486 aaPredicted RBP24.66■■□□□ 1.54
UPF1-212ENST00000601689 HOXA10P31260 410 aaPredicted RBP24.66■■□□□ 1.54
UPF1-212ENST00000601689 GRIPAP1Q4V328 841 aa24.66■■□□□ 1.54
UPF1-212ENST00000601689 G2E3Q7L622 706 aa24.66■■□□□ 1.54
UPF1-212ENST00000601689 IRS4O14654 1257 aaPredicted RBP24.65■■□□□ 1.54
UPF1-212ENST00000601689 LMNB1P20700 586 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 C9orf131Q5VYM1 1079 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 RTKN2Q8IZC4 609 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 ZNF784Q8NCA9 323 aaPredicted RBP24.65■■□□□ 1.54
UPF1-212ENST00000601689 DNAAF4Q8WXU2 420 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 TAOK3Q9H2K8 898 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 RNF181Q9P0P0 153 aa24.65■■□□□ 1.54
UPF1-212ENST00000601689 TNRC6CQ9HCJ0 1690 aaKnown RBP24.65■■□□□ 1.54
UPF1-212ENST00000601689 RTL5Q5HYW3 569 aaPredicted RBP24.64■■□□□ 1.54
UPF1-212ENST00000601689 CDCA7LQ96GN5 454 aa24.64■■□□□ 1.54
UPF1-212ENST00000601689 PCCAP05165 728 aaPredicted RBP24.63■■□□□ 1.53
UPF1-212ENST00000601689 ADCY9O60503 1353 aa24.63■■□□□ 1.53
UPF1-212ENST00000601689 SBF1O95248 1867 aa24.62■■□□□ 1.53
UPF1-212ENST00000601689 CCDC88AQ3V6T2 1871 aa24.62■■□□□ 1.53
UPF1-212ENST00000601689 PPEF1O14829 653 aaPredicted RBP24.61■■□□□ 1.53
UPF1-212ENST00000601689 BBOX1O75936 387 aa24.61■■□□□ 1.53
UPF1-212ENST00000601689 RASSF7Q02833 373 aa24.61■■□□□ 1.53
UPF1-212ENST00000601689 FER1L6Q2WGJ9 1857 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 PDE8AO60658 829 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 ALDH1L2Q3SY69 923 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 TMC4Q7Z404 712 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 SYNE4Q8N205 404 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 LINS1Q8NG48 757 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 GPBP1L1Q9HC44 474 aaPredicted RBP24.6■■□□□ 1.53
UPF1-212ENST00000601689 LTBP3Q9NS15 1303 aa24.6■■□□□ 1.53
UPF1-212ENST00000601689 ZC3H4Q9UPT8 1303 aaKnown RBP24.6■■□□□ 1.53
UPF1-212ENST00000601689 NEURL1BA8MQ27 555 aa24.59■■□□□ 1.53
UPF1-212ENST00000601689 SF3B3Q15393 1217 aaKnown RBP24.59■■□□□ 1.53
UPF1-212ENST00000601689 TRMT2AQ8IZ69 625 aaKnown RBP24.59■■□□□ 1.53
UPF1-212ENST00000601689 LAMB2P55268 1798 aa24.58■■□□□ 1.53
UPF1-212ENST00000601689 CCDC152Q4G0S7 254 aa24.58■■□□□ 1.53
UPF1-212ENST00000601689 C7orf43Q8WVR3 580 aa24.58■■□□□ 1.53
UPF1-212ENST00000601689 PTPRCP08575 1304 aa24.58■■□□□ 1.52
UPF1-212ENST00000601689 NFKBIEO00221 500 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 IGKV5-2P06315 115 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 FKBP4Q02790 459 aaKnown RBP eCLIP24.57■■□□□ 1.52
UPF1-212ENST00000601689 GRAPQ13588 217 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 CWF19L2Q2TBE0 894 aaKnown RBP24.57■■□□□ 1.52
UPF1-212ENST00000601689 C3orf67Q6ZVT6 689 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 GRAPLQ8TC17 118 aaPredicted RBP24.57■■□□□ 1.52
UPF1-212ENST00000601689 DDX60Q8IY21 1712 aaKnown RBP24.57■■□□□ 1.52
UPF1-212ENST00000601689 ABCC4O15439 1325 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 CDHR2Q9BYE9 1310 aa24.57■■□□□ 1.52
UPF1-212ENST00000601689 SLC4A10Q6U841 1118 aa24.56■■□□□ 1.52
UPF1-212ENST00000601689 ZNF526Q8TF50 670 aaPredicted RBP24.56■■□□□ 1.52
UPF1-212ENST00000601689 SMC4Q9NTJ3 1288 aa24.56■■□□□ 1.52
UPF1-212ENST00000601689 KDM2BQ8NHM5 1336 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms