RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SLC10A5Q5PT55 438 aa21.01■□□□□ 0.95
SHKBP1-219ENST00000599575 TRMT112Q9UI30 125 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-219ENST00000599575 RCAN3Q9UKA8 241 aa21.01■□□□□ 0.95
SHKBP1-219ENST00000599575 SH3TC1Q8TE82 1336 aa21.01■□□□□ 0.95
SHKBP1-219ENST00000599575 PXDNLA1KZ92 1463 aa21.01■□□□□ 0.95
SHKBP1-219ENST00000599575 ARFGEF2Q9Y6D5 1785 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 NEURL1BA8MQ27 555 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 ATP5J2-PTCD1G3V325 749 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 IGKV5-2P06315 115 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 BEND3Q5T5X7 828 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 ZBTB38Q8NAP3 1195 aaPredicted RBP21■□□□□ 0.95
SHKBP1-219ENST00000599575 SYT17Q9BSW7 474 aa21■□□□□ 0.95
SHKBP1-219ENST00000599575 KLRG2A4D1S0 409 aaPredicted RBP20.99■□□□□ 0.95
SHKBP1-219ENST00000599575 BCAR3O75815 825 aa20.99■□□□□ 0.95
SHKBP1-219ENST00000599575 SRCIN1Q9C0H9 1055 aa20.99■□□□□ 0.95
SHKBP1-219ENST00000599575 ANKRD36CQ5JPF3 1778 aa20.99■□□□□ 0.95
SHKBP1-219ENST00000599575 F6X3S4 739 aa20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 PCCAP05165 728 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 MS4A1P11836 297 aa20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 CCT4P50991 539 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 ZKSCAN2Q63HK3 967 aa20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 ATF7IPQ6VMQ6 1270 aa20.98■□□□□ 0.95
SHKBP1-219ENST00000599575 GCKRQ14397 625 aa20.97■□□□□ 0.95
SHKBP1-219ENST00000599575 FAM177BA6PVY3 158 aa20.96■□□□□ 0.95
SHKBP1-219ENST00000599575 SLC4A10Q6U841 1118 aa20.96■□□□□ 0.95
SHKBP1-219ENST00000599575 CDHR2Q9BYE9 1310 aa20.96■□□□□ 0.95
SHKBP1-219ENST00000599575 KIF13BQ9NQT8 1826 aa20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 H0YIN7 160 aa20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 CWF19L2Q2TBE0 894 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 ERFEQ4G0M1 354 aa20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 KLHL34Q8N239 644 aa20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 FRAT1Q92837 279 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 NLRP3Q96P20 1036 aa20.95■□□□□ 0.94
SHKBP1-219ENST00000599575 H7C1W4 665 aa20.94■□□□□ 0.94
SHKBP1-219ENST00000599575 CRY2Q49AN0 593 aa20.94■□□□□ 0.94
SHKBP1-219ENST00000599575 NUTM1Q86Y26 1132 aa20.94■□□□□ 0.94
SHKBP1-219ENST00000599575 ABCC4O15439 1325 aa20.94■□□□□ 0.94
SHKBP1-219ENST00000599575 AFDNP55196 1824 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-219ENST00000599575 TRIM27P14373 513 aa20.93■□□□□ 0.94
SHKBP1-219ENST00000599575 INTS3Q68E01 1043 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-219ENST00000599575 FAM89AQ96GI7 184 aa20.93■□□□□ 0.94
SHKBP1-219ENST00000599575 HDAC5Q9UQL6 1122 aa20.93■□□□□ 0.94
SHKBP1-219ENST00000599575 IRS4O14654 1257 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-219ENST00000599575 GRM8O00222 908 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 UTYO14607 1347 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 SRGNP10124 158 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 NPR1P16066 1061 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 STYK1Q6J9G0 422 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 C2CD5Q86YS7 1000 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 MASTLQ96GX5 879 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 ABCC12Q96J65 1359 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 C9orf78Q9NZ63 289 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 PIM2Q9P1W9 311 aa20.91■□□□□ 0.94
SHKBP1-219ENST00000599575 DPEP1P16444 411 aa20.9■□□□□ 0.94
SHKBP1-219ENST00000599575 HOXA10P31260 410 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-219ENST00000599575 FTSJ3Q8IY81 847 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-219ENST00000599575 PLA2G12BQ9BX93 195 aa20.9■□□□□ 0.94
SHKBP1-219ENST00000599575 PDE8AO60658 829 aa20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 ALDH1B1P30837 517 aa20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 SF3B3Q15393 1217 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 DZIP1LQ8IYY4 767 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 NLGN2Q8NFZ4 835 aa20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 CNKSR1Q969H4 720 aa20.89■□□□□ 0.93
SHKBP1-219ENST00000599575 A0A0G2JLW4 131 aa20.88■□□□□ 0.93
SHKBP1-219ENST00000599575 KCNA3P22001 575 aa20.88■□□□□ 0.93
SHKBP1-219ENST00000599575 CASP7P55210 303 aa20.88■□□□□ 0.93
SHKBP1-219ENST00000599575 UBE3BQ7Z3V4 1068 aa20.88■□□□□ 0.93
SHKBP1-219ENST00000599575 CCDC24Q8N4L8 307 aa20.88■□□□□ 0.93
SHKBP1-219ENST00000599575 DCAF8L1A6NGE4 600 aa20.87■□□□□ 0.93
SHKBP1-219ENST00000599575 HCLS1P14317 486 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-219ENST00000599575 PDE3AQ14432 1141 aa20.87■□□□□ 0.93
SHKBP1-219ENST00000599575 RPGRQ92834 1020 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-219ENST00000599575 CRAMP1Q96RY5 1269 aa20.87■□□□□ 0.93
SHKBP1-219ENST00000599575 CHRNA5P30532 468 aa20.86■□□□□ 0.93
SHKBP1-219ENST00000599575 SYNE4Q8N205 404 aa20.86■□□□□ 0.93
SHKBP1-219ENST00000599575 TTLL6Q8N841 843 aa20.86■□□□□ 0.93
SHKBP1-219ENST00000599575 RBM17Q96I25 401 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-219ENST00000599575 CCDC152Q4G0S7 254 aa20.85■□□□□ 0.93
SHKBP1-219ENST00000599575 DALRD3Q5D0E6 543 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-219ENST00000599575 USP44Q9H0E7 712 aa20.85■□□□□ 0.93
SHKBP1-219ENST00000599575 RTL9Q8NET4 1388 aa20.85■□□□□ 0.93
SHKBP1-219ENST00000599575 GNAI3P08754 354 aa20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 RTL5Q5HYW3 569 aaPredicted RBP20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 DDX46Q7L014 1031 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 TMC4Q7Z404 712 aa20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 CLUAP1Q96AJ1 413 aa20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 CHMP4BQ9H444 224 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 ANKRD31Q8N7Z5 1873 aa20.84■□□□□ 0.93
SHKBP1-219ENST00000599575 CTSWP56202 376 aa20.83■□□□□ 0.93
SHKBP1-219ENST00000599575 ZNF622Q969S3 477 aaKnown RBP eCLIP20.83■□□□□ 0.932e-8■□□□□ 10.5
SHKBP1-219ENST00000599575 KIAA1551Q9HCM1 1747 aa20.83■□□□□ 0.92
SHKBP1-219ENST00000599575 N4BP2Q86UW6 1770 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 GRIN3BO60391 1043 aa20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 BBOX1O75936 387 aa20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 CSF1RP07333 972 aa20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 NBPF7P0C2Y1 421 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 GRIPAP1Q4V328 841 aa20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 SOGA3Q5TF21 947 aa20.82■□□□□ 0.92
SHKBP1-219ENST00000599575 UBTFL1P0CB47 393 aaPredicted RBP20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms