RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 GOLGB1Q14789 3259 aaKnown RBP25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 CACNA1SQ13698 1873 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 ADCY9O60503 1353 aa25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 NTSR2O95665 410 aa25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 CHRNA5P30532 468 aa25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 ISCA1Q9BUE6 129 aa25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 METTL22Q9BUU2 404 aaPredicted RBP25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 WWC3Q9ULE0 1092 aa25.1■■□□□ 1.61
SHKBP1-214ENST00000597396 C2CD5Q86YS7 1000 aa25.09■■□□□ 1.61
SHKBP1-214ENST00000597396 SSH1Q8WYL5 1049 aa25.09■■□□□ 1.61
SHKBP1-214ENST00000597396 TNRC6CQ9HCJ0 1690 aaKnown RBP25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 H0YIN7 160 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 NEXNQ0ZGT2 675 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 ALDH1L2Q3SY69 923 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 ERFEQ4G0M1 354 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 MRPL50Q8N5N7 158 aaKnown RBP25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 BCL2L13Q9BXK5 485 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 TRMT112Q9UI30 125 aaKnown RBP25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 PDZRN3Q9UPQ7 1066 aa25.08■■□□□ 1.61
SHKBP1-214ENST00000597396 ABCC12Q96J65 1359 aa25.07■■□□□ 1.6
SHKBP1-214ENST00000597396 SMC4Q9NTJ3 1288 aa25.07■■□□□ 1.6
SHKBP1-214ENST00000597396 RNF123Q5XPI4 1314 aa25.07■■□□□ 1.6
SHKBP1-214ENST00000597396 C1QTNF8P60827 252 aa25.06■■□□□ 1.6
SHKBP1-214ENST00000597396 TRIM28Q13263 835 aaKnown RBP25.06■■□□□ 1.6
SHKBP1-214ENST00000597396 DNAAF4Q8WXU2 420 aa25.06■■□□□ 1.6
SHKBP1-214ENST00000597396 ARFGEF1Q9Y6D6 1849 aa25.06■■□□□ 1.6
SHKBP1-214ENST00000597396 LAMB2P55268 1798 aa25.05■■□□□ 1.6
SHKBP1-214ENST00000597396 PIM2Q9P1W9 311 aa25.05■■□□□ 1.6
SHKBP1-214ENST00000597396 KCNA3P22001 575 aa25.04■■□□□ 1.6
SHKBP1-214ENST00000597396 CCDC191Q8NCU4 936 aa25.04■■□□□ 1.6
SHKBP1-214ENST00000597396 SH3TC1Q8TE82 1336 aa25.04■■□□□ 1.6
SHKBP1-214ENST00000597396 RIC1Q4ADV7 1423 aa25.03■■□□□ 1.6
SHKBP1-214ENST00000597396 DDX60Q8IY21 1712 aaKnown RBP25.03■■□□□ 1.6
SHKBP1-214ENST00000597396 ZNF622Q969S3 477 aaKnown RBP eCLIP25.03■■□□□ 1.6
SHKBP1-214ENST00000597396 CWC25Q9NXE8 425 aaPredicted RBP25.03■■□□□ 1.6
SHKBP1-214ENST00000597396 BCS1LQ9Y276 419 aa25.03■■□□□ 1.6
SHKBP1-214ENST00000597396 F6X3S4 739 aa25.02■■□□□ 1.6
SHKBP1-214ENST00000597396 RARSP54136 660 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-214ENST00000597396 DALRD3Q5D0E6 543 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-214ENST00000597396 PTPRCP08575 1304 aa25.01■■□□□ 1.59
SHKBP1-214ENST00000597396 IGKV5-2P06315 115 aa25■■□□□ 1.59
SHKBP1-214ENST00000597396 SRGNP10124 158 aa25■■□□□ 1.59
SHKBP1-214ENST00000597396 RTL5Q5HYW3 569 aaPredicted RBP25■■□□□ 1.59
SHKBP1-214ENST00000597396 SYNE4Q8N205 404 aa25■■□□□ 1.59
SHKBP1-214ENST00000597396 FAM89AQ96GI7 184 aa25■■□□□ 1.59
SHKBP1-214ENST00000597396 MASTLQ96GX5 879 aa25■■□□□ 1.59
SHKBP1-214ENST00000597396 YTHDC1Q96MU7 727 aaKnown RBP25■■□□□ 1.59
SHKBP1-214ENST00000597396 NEURL1BA8MQ27 555 aa24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 MYH3P11055 1940 aa24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 CWF19L2Q2TBE0 894 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 SLC10A5Q5PT55 438 aa24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 TTLL6Q8N841 843 aa24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 NLRP3Q96P20 1036 aa24.99■■□□□ 1.59
SHKBP1-214ENST00000597396 KLRG2A4D1S0 409 aaPredicted RBP24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 HCLS1P14317 486 aaPredicted RBP24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 NPR1P16066 1061 aa24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 STYK1Q6J9G0 422 aa24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 SLC4A10Q6U841 1118 aa24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 ZBTB38Q8NAP3 1195 aaPredicted RBP24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 LINS1Q8NG48 757 aa24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 SLX4Q8IY92 1834 aa24.98■■□□□ 1.59
SHKBP1-214ENST00000597396 PCCAP05165 728 aaPredicted RBP24.97■■□□□ 1.59
SHKBP1-214ENST00000597396 RPGRQ92834 1020 aaKnown RBP24.97■■□□□ 1.59
SHKBP1-214ENST00000597396 CNKSR1Q969H4 720 aa24.97■■□□□ 1.59
SHKBP1-214ENST00000597396 IRS4O14654 1257 aaPredicted RBP24.96■■□□□ 1.59
SHKBP1-214ENST00000597396 KIF16BQ96L93 1317 aa24.95■■□□□ 1.58
SHKBP1-214ENST00000597396 HSP90B1P14625 803 aaKnown RBP24.95■■□□□ 1.58
SHKBP1-214ENST00000597396 BRPF1P55201 1214 aaPredicted RBP24.95■■□□□ 1.58
SHKBP1-214ENST00000597396 CRY2Q49AN0 593 aa24.95■■□□□ 1.58
SHKBP1-214ENST00000597396 JARID2Q92833 1246 aaPredicted RBP24.95■■□□□ 1.58
SHKBP1-214ENST00000597396 BEND3Q5T5X7 828 aa24.94■■□□□ 1.58
SHKBP1-214ENST00000597396 C3orf67Q6ZVT6 689 aa24.94■■□□□ 1.58
SHKBP1-214ENST00000597396 NOB1Q9ULX3 412 aaKnown RBP24.94■■□□□ 1.58
SHKBP1-214ENST00000597396 GCKRQ14397 625 aa24.93■■□□□ 1.58
SHKBP1-214ENST00000597396 TAF1P21675 1872 aa24.92■■□□□ 1.58
SHKBP1-214ENST00000597396 ALDH1B1P30837 517 aa24.92■■□□□ 1.58
SHKBP1-214ENST00000597396 RBM17Q96I25 401 aaKnown RBP24.92■■□□□ 1.58
SHKBP1-214ENST00000597396 SRCIN1Q9C0H9 1055 aa24.92■■□□□ 1.58
SHKBP1-214ENST00000597396 CDHR2Q9BYE9 1310 aa24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 BCAR3O75815 825 aa24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 PRPF40BQ6NWY9 871 aaKnown RBP24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 UBE3BQ7Z3V4 1068 aa24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 API5Q9BZZ5 524 aaKnown RBP24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 GPBP1L1Q9HC44 474 aaPredicted RBP24.91■■□□□ 1.58
SHKBP1-214ENST00000597396 ALDH1L1O75891 902 aa24.9■■□□□ 1.58
SHKBP1-214ENST00000597396 ZNF219Q9P2Y4 722 aaPredicted RBP24.9■■□□□ 1.58
SHKBP1-214ENST00000597396 H7C1W4 665 aa24.89■■□□□ 1.58
SHKBP1-214ENST00000597396 PDE8AO60658 829 aa24.89■■□□□ 1.58
SHKBP1-214ENST00000597396 HOXA10P31260 410 aaPredicted RBP24.89■■□□□ 1.58
SHKBP1-214ENST00000597396 ARHGAP27Q6ZUM4 889 aa24.89■■□□□ 1.58
SHKBP1-214ENST00000597396 ZNF526Q8TF50 670 aaPredicted RBP24.89■■□□□ 1.58
SHKBP1-214ENST00000597396 CCDC88AQ3V6T2 1871 aa24.88■■□□□ 1.57
SHKBP1-214ENST00000597396 IPO8O15397 1037 aaKnown RBP24.88■■□□□ 1.57
SHKBP1-214ENST00000597396 DDX46Q7L014 1031 aaKnown RBP24.88■■□□□ 1.57
SHKBP1-214ENST00000597396 FRAT1Q92837 279 aaPredicted RBP24.88■■□□□ 1.57
SHKBP1-214ENST00000597396 CRAMP1Q96RY5 1269 aa24.88■■□□□ 1.57
SHKBP1-214ENST00000597396 C21orf2O43822 256 aa24.87■■□□□ 1.57
SHKBP1-214ENST00000597396 SF3B3Q15393 1217 aaKnown RBP24.87■■□□□ 1.57
SHKBP1-214ENST00000597396 C9orf78Q9NZ63 289 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-214ENST00000597396 FER1L6Q2WGJ9 1857 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms