RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 ANKRD31Q8N7Z5 1873 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 GLTPD2A6NH11 291 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 ELL2O00472 640 aaPredicted RBP13.62□□□□□ -0.23
CCDC9-203ENST00000596938 CCDC93Q567U6 631 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 RTKN2Q8IZC4 609 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 NLRP3Q96P20 1036 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 CRAMP1Q96RY5 1269 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 NMRK2Q9NPI5 230 aa13.62□□□□□ -0.23
CCDC9-203ENST00000596938 DLEC1Q9Y238 1755 aa13.61□□□□□ -0.23
CCDC9-203ENST00000596938 TOMM70O94826 608 aa13.61□□□□□ -0.23
CCDC9-203ENST00000596938 TRIM28Q13263 835 aaKnown RBP13.61□□□□□ -0.23
CCDC9-203ENST00000596938 GRIPAP1Q4V328 841 aa13.61□□□□□ -0.23
CCDC9-203ENST00000596938 CC2D2BQ6DHV5 1058 aa13.61□□□□□ -0.23
CCDC9-203ENST00000596938 RPGRQ92834 1020 aaKnown RBP13.61□□□□□ -0.23
CCDC9-203ENST00000596938 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 CCDC30Q5VVM6 783 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 DPY19L2Q6NUT2 758 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 WDR63Q8IWG1 891 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 RBM17Q96I25 401 aaKnown RBP13.6□□□□□ -0.23
CCDC9-203ENST00000596938 ISCA1Q9BUE6 129 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 RRAGCQ9HB90 399 aa13.6□□□□□ -0.23
CCDC9-203ENST00000596938 TRMT112Q9UI30 125 aaKnown RBP13.6□□□□□ -0.23
CCDC9-203ENST00000596938 FKBP4Q02790 459 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC9-203ENST00000596938 C3orf67Q6ZVT6 689 aa13.59□□□□□ -0.23
CCDC9-203ENST00000596938 TSPYL6Q8N831 410 aa13.59□□□□□ -0.23
CCDC9-203ENST00000596938 SH3TC1Q8TE82 1336 aa13.59□□□□□ -0.23
CCDC9-203ENST00000596938 CEP350Q5VT06 3117 aa13.59□□□□□ -0.23
CCDC9-203ENST00000596938 VEGFAP15692 232 aaPredicted RBP13.58□□□□□ -0.24
CCDC9-203ENST00000596938 OLFM4Q6UX06 510 aa13.58□□□□□ -0.24
CCDC9-203ENST00000596938 TSR2Q969E8 191 aaKnown RBP13.58□□□□□ -0.24
CCDC9-203ENST00000596938 PHAXQ9H814 394 aaKnown RBP13.58□□□□□ -0.24
CCDC9-203ENST00000596938 COL11A2P13942 1736 aaPredicted RBP13.57□□□□□ -0.24
CCDC9-203ENST00000596938 ATP5J2-PTCD1G3V325 749 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 BBOX1O75936 387 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 HCLS1P14317 486 aaPredicted RBP13.57□□□□□ -0.24
CCDC9-203ENST00000596938 HSPA6P17066 643 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 GOLGA2Q08379 1002 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 RIC3Q7Z5B4 369 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
CCDC9-203ENST00000596938 SYNE4Q8N205 404 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 RBM46Q8TBY0 533 aaKnown RBP13.57□□□□□ -0.24
CCDC9-203ENST00000596938 PSMD1Q99460 953 aa13.57□□□□□ -0.24
CCDC9-203ENST00000596938 NUP98P52948 1817 aa13.56□□□□□ -0.24
CCDC9-203ENST00000596938 SLX4Q8IY92 1834 aa13.56□□□□□ -0.24
CCDC9-203ENST00000596938 DDX58O95786 925 aaKnown RBP13.56□□□□□ -0.24
CCDC9-203ENST00000596938 FAM9BQ8IZU0 186 aa13.56□□□□□ -0.24
CCDC9-203ENST00000596938 PPEF1O14829 653 aaPredicted RBP13.55□□□□□ -0.24
CCDC9-203ENST00000596938 FSTL1Q12841 308 aa13.55□□□□□ -0.24
CCDC9-203ENST00000596938 TWISTNBQ3B726 338 aaPredicted RBP13.55□□□□□ -0.24
CCDC9-203ENST00000596938 FAM89AQ96GI7 184 aa13.55□□□□□ -0.24
CCDC9-203ENST00000596938 TMX4Q9H1E5 349 aaPredicted RBP13.55□□□□□ -0.24
CCDC9-203ENST00000596938 ZNF277Q9NRM2 450 aaPredicted RBP13.55□□□□□ -0.24
CCDC9-203ENST00000596938 ATP6V0A2Q9Y487 856 aa13.55□□□□□ -0.24
CCDC9-203ENST00000596938 POTECB2RU33 542 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 SF3B3Q15393 1217 aaKnown RBP13.54□□□□□ -0.24
CCDC9-203ENST00000596938 DDX46Q7L014 1031 aaKnown RBP13.54□□□□□ -0.24
CCDC9-203ENST00000596938 CCDC191Q8NCU4 936 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 METTL22Q9BUU2 404 aaPredicted RBP13.54□□□□□ -0.24
CCDC9-203ENST00000596938 STK31Q9BXU1 1019 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 VPS33BQ9H267 617 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 SALL2Q9Y467 1007 aaPredicted RBP13.54□□□□□ -0.24
CCDC9-203ENST00000596938 SBF1O95248 1867 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 SNED1Q8TER0 1413 aa13.54□□□□□ -0.24
CCDC9-203ENST00000596938 DDNO94850 711 aaPredicted RBP13.53□□□□□ -0.24
CCDC9-203ENST00000596938 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
CCDC9-203ENST00000596938 IARSP41252 1262 aaKnown RBP13.53□□□□□ -0.24
CCDC9-203ENST00000596938 KSR2Q6VAB6 950 aa13.53□□□□□ -0.24
CCDC9-203ENST00000596938 SP8Q8IXZ3 490 aa13.53□□□□□ -0.24
CCDC9-203ENST00000596938 ZBTB38Q8NAP3 1195 aaPredicted RBP13.53□□□□□ -0.24
CCDC9-203ENST00000596938 ABCC4O15439 1325 aa13.53□□□□□ -0.24
CCDC9-203ENST00000596938 FZD9O00144 591 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 VAMP4O75379 141 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 HSP90B1P14625 803 aaKnown RBP13.52□□□□□ -0.25
CCDC9-203ENST00000596938 GRAPQ13588 217 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 TMC4Q7Z404 712 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 GRAPLQ8TC17 118 aaPredicted RBP13.52□□□□□ -0.25
CCDC9-203ENST00000596938 MYD88Q99836 296 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 FANCIQ9NVI1 1328 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 FER1L6Q2WGJ9 1857 aa13.52□□□□□ -0.25
CCDC9-203ENST00000596938 TNRC6CQ9HCJ0 1690 aaKnown RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 PI4KAP2A4QPH2 592 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 IRS4O14654 1257 aaPredicted RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 TCERG1O14776 1098 aaKnown RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 PCCAP05165 728 aaPredicted RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 APLP1P51693 650 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 PI4KAP1Q8N8J0 262 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 SMC1BQ8NDV3 1235 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 JDP2Q8WYK2 163 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 ZNF428Q96B54 188 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 L3MBTL3Q96JM7 780 aaPredicted RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 RTFDC1Q9BY42 306 aaPredicted RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 MYH16Q9H6N6 1097 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 CWC25Q9NXE8 425 aaPredicted RBP13.51□□□□□ -0.25
CCDC9-203ENST00000596938 MAP3K2Q9Y2U5 619 aa13.51□□□□□ -0.25
CCDC9-203ENST00000596938 ARFGEF2Q9Y6D5 1785 aa13.5□□□□□ -0.25
CCDC9-203ENST00000596938 EXOSC9Q06265 439 aaKnown RBP13.5□□□□□ -0.25
CCDC9-203ENST00000596938 RTL5Q5HYW3 569 aaPredicted RBP13.5□□□□□ -0.25
CCDC9-203ENST00000596938 SUPT20HQ8NEM7 779 aa13.5□□□□□ -0.25
CCDC9-203ENST00000596938 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
CCDC9-203ENST00000596938 IQCA1LA6NCM1 817 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms