RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SRP68Q9UHB9 627 aaKnown RBP18.36■□□□□ 0.53
VRK3-212ENST00000596814 UBE3BQ7Z3V4 1068 aa18.35■□□□□ 0.53
VRK3-212ENST00000596814 RWDD1Q9H446 243 aaPredicted RBP18.35■□□□□ 0.53
VRK3-212ENST00000596814 HDAC1Q13547 482 aaPredicted RBP18.35■□□□□ 0.53
VRK3-212ENST00000596814 RPAP2Q8IXW5 612 aaPredicted RBP18.35■□□□□ 0.53
VRK3-212ENST00000596814 ANKRD44Q8N8A2 993 aa18.35■□□□□ 0.53
VRK3-212ENST00000596814 TFCP2L1Q9NZI6 479 aa18.35■□□□□ 0.53
VRK3-212ENST00000596814 UBN2Q6ZU65 1347 aa18.34■□□□□ 0.53
VRK3-212ENST00000596814 KDM2BQ8NHM5 1336 aa18.34■□□□□ 0.53
VRK3-212ENST00000596814 QSER1Q2KHR3 1735 aa18.34■□□□□ 0.53
VRK3-212ENST00000596814 CENPQQ7L2Z9 268 aaPredicted RBP18.34■□□□□ 0.53
VRK3-212ENST00000596814 SUCLG2Q96I99 432 aa18.34■□□□□ 0.53
VRK3-212ENST00000596814 BCL2L12Q9HB09 334 aa18.34■□□□□ 0.53
VRK3-212ENST00000596814 NIP7Q9Y221 180 aaKnown RBP eCLIP18.34■□□□□ 0.53
VRK3-212ENST00000596814 COL24A1Q17RW2 1714 aa18.33■□□□□ 0.53
VRK3-212ENST00000596814 H7C1W4 665 aa18.33■□□□□ 0.52
VRK3-212ENST00000596814 IGHDP01880 384 aa18.33■□□□□ 0.52
VRK3-212ENST00000596814 CASP7P55210 303 aa18.33■□□□□ 0.52
VRK3-212ENST00000596814 PARP10Q53GL7 1025 aa18.33■□□□□ 0.52
VRK3-212ENST00000596814 SIRT2Q8IXJ6 389 aa18.32■□□□□ 0.52
VRK3-212ENST00000596814 JARID2Q92833 1246 aaPredicted RBP18.32■□□□□ 0.52
VRK3-212ENST00000596814 PCCAP05165 728 aaPredicted RBP18.32■□□□□ 0.52
VRK3-212ENST00000596814 ZBTB38Q8NAP3 1195 aaPredicted RBP18.32■□□□□ 0.52
VRK3-212ENST00000596814 FLAD1Q8NFF5 587 aa18.32■□□□□ 0.52
VRK3-212ENST00000596814 ANO8Q9HCE9 1232 aaPredicted RBP18.32■□□□□ 0.52
VRK3-212ENST00000596814 HMMRO75330 724 aa18.31■□□□□ 0.52
VRK3-212ENST00000596814 RTL5Q5HYW3 569 aaPredicted RBP18.31■□□□□ 0.52
VRK3-212ENST00000596814 STK32BQ9NY57 414 aa18.31■□□□□ 0.52
VRK3-212ENST00000596814 TBC1D9BQ66K14 1250 aa18.3■□□□□ 0.52
VRK3-212ENST00000596814 KAZALD1Q96I82 304 aa18.3■□□□□ 0.52
VRK3-212ENST00000596814 BICC1Q9H694 974 aaKnown RBP18.3■□□□□ 0.52
VRK3-212ENST00000596814 TRMT112Q9UI30 125 aaKnown RBP18.3■□□□□ 0.52
VRK3-212ENST00000596814 LAMB2P55268 1798 aa18.3■□□□□ 0.52
VRK3-212ENST00000596814 ATP8B2P98198 1209 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 SUSD4Q5VX71 490 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 PPP1R42Q7Z4L9 355 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 FAM89AQ96GI7 184 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 CDHR2Q9BYE9 1310 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 MYH3P11055 1940 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 MTX1Q13505 466 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 SLC15A2Q16348 729 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 BICDL1Q6ZP65 573 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 UTP14AQ9BVJ6 771 aaKnown RBP18.29■□□□□ 0.52
VRK3-212ENST00000596814 PNPLA7Q6ZV29 1317 aa18.29■□□□□ 0.52
VRK3-212ENST00000596814 PNMA6EA0A0J9YXQ4 647 aa18.28■□□□□ 0.52
VRK3-212ENST00000596814 GYS1P13807 737 aa18.28■□□□□ 0.52
VRK3-212ENST00000596814 COL23A1Q86Y22 540 aaPredicted RBP18.28■□□□□ 0.52
VRK3-212ENST00000596814 SETDB2Q96T68 719 aa18.28■□□□□ 0.52
VRK3-212ENST00000596814 SH3TC1Q8TE82 1336 aa18.27■□□□□ 0.52
VRK3-212ENST00000596814 FAM177BA6PVY3 158 aa18.27■□□□□ 0.52
VRK3-212ENST00000596814 NTSR2O95665 410 aa18.27■□□□□ 0.52
VRK3-212ENST00000596814 EPHA10Q5JZY3 1008 aa18.27■□□□□ 0.52
VRK3-212ENST00000596814 DDX60Q8IY21 1712 aaKnown RBP18.27■□□□□ 0.52
VRK3-212ENST00000596814 MSH5O43196 834 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 SRGAP3O43295 1099 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 RABL6Q3YEC7 729 aaPredicted RBP18.26■□□□□ 0.51
VRK3-212ENST00000596814 UPF1Q92900 1129 aaKnown RBP eCLIP18.26■□□□□ 0.51
VRK3-212ENST00000596814 PLA2G12BQ9BX93 195 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 CARMIL3Q8ND23 1372 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 SMC5Q8IY18 1101 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 SSH3Q8TE77 659 aa18.26■□□□□ 0.51
VRK3-212ENST00000596814 IRS4O14654 1257 aaPredicted RBP18.25■□□□□ 0.51
VRK3-212ENST00000596814 FOXO4P98177 505 aa18.25■□□□□ 0.51
VRK3-212ENST00000596814 POLA2Q14181 598 aa18.25■□□□□ 0.51
VRK3-212ENST00000596814 SYNE4Q8N205 404 aa18.25■□□□□ 0.51
VRK3-212ENST00000596814 GCC1Q96CN9 775 aa18.25■□□□□ 0.51
VRK3-212ENST00000596814 NYXQ9GZU5 481 aa18.25■□□□□ 0.51
VRK3-212ENST00000596814 NFIXQ14938 502 aa18.24■□□□□ 0.51
VRK3-212ENST00000596814 LMBR1LQ6UX01 489 aa18.23■□□□□ 0.51
VRK3-212ENST00000596814 NBPF5PQ86XG9 351 aaPredicted RBP18.23■□□□□ 0.51
VRK3-212ENST00000596814 DCTPP1Q9H773 170 aa18.23■□□□□ 0.51
VRK3-212ENST00000596814 HSP90B1P14625 803 aaKnown RBP18.23■□□□□ 0.51
VRK3-212ENST00000596814 NUTM1Q86Y26 1132 aa18.23■□□□□ 0.51
VRK3-212ENST00000596814 CASZ1Q86V15 1759 aa18.22■□□□□ 0.51
VRK3-212ENST00000596814 PDE8AO60658 829 aa18.22■□□□□ 0.51
VRK3-212ENST00000596814 CHMP3Q9Y3E7 222 aa18.22■□□□□ 0.51
VRK3-212ENST00000596814 GTF2E1P29083 439 aaPredicted RBP18.21■□□□□ 0.51
VRK3-212ENST00000596814 CTSWP56202 376 aa18.21■□□□□ 0.51
VRK3-212ENST00000596814 HCLS1P14317 486 aaPredicted RBP18.2■□□□□ 0.5
VRK3-212ENST00000596814 TM4SF1P30408 202 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 ERFEQ4G0M1 354 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 TPTE2Q6XPS3 522 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 NLGN1Q8N2Q7 840 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 ABCC12Q96J65 1359 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 EXOC6BQ9Y2D4 811 aa18.2■□□□□ 0.5
VRK3-212ENST00000596814 NPHP1O15259 732 aa18.19■□□□□ 0.5
VRK3-212ENST00000596814 CSF1RP07333 972 aa18.19■□□□□ 0.5
VRK3-212ENST00000596814 PDZRN3Q9UPQ7 1066 aa18.19■□□□□ 0.5
VRK3-212ENST00000596814 SURF6O75683 361 aaKnown RBP18.18■□□□□ 0.5
VRK3-212ENST00000596814 RFX5P48382 616 aaPredicted RBP18.18■□□□□ 0.5
VRK3-212ENST00000596814 DDR1Q08345 913 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 FAM161AQ3B820 660 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 CNBD1Q8NA66 436 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 TTLL11Q8NHH1 800 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 PA2G4Q9UQ80 394 aaKnown RBP18.18■□□□□ 0.5
VRK3-212ENST00000596814 NRXN2Q9P2S2 1712 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 POLRMTO00411 1230 aaKnown RBP18.18■□□□□ 0.5
VRK3-212ENST00000596814 NUCB1Q02818 461 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 ANKRD45Q5TZF3 282 aa18.18■□□□□ 0.5
VRK3-212ENST00000596814 NOP58Q9Y2X3 529 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms