RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 DICER1Q9UPY3 1922 aaKnown RBP20.9■□□□□ 0.94
TRIM28-206ENST00000595974 GOLGA2Q08379 1002 aa20.9■□□□□ 0.94
TRIM28-206ENST00000595974 CRY2Q49AN0 593 aa20.9■□□□□ 0.94
TRIM28-206ENST00000595974 NLRP10Q86W26 655 aa20.9■□□□□ 0.94
TRIM28-206ENST00000595974 UTP14AQ9BVJ6 771 aaKnown RBP20.9■□□□□ 0.94
TRIM28-206ENST00000595974 TIAM2Q8IVF5 1701 aa20.9■□□□□ 0.94
TRIM28-206ENST00000595974 TWISTNBQ3B726 338 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-206ENST00000595974 C9orf131Q5VYM1 1079 aa20.89■□□□□ 0.93
TRIM28-206ENST00000595974 RASSF7Q02833 373 aa20.88■□□□□ 0.93
TRIM28-206ENST00000595974 SOGA3Q5TF21 947 aa20.88■□□□□ 0.93
TRIM28-206ENST00000595974 PHAXQ9H814 394 aaKnown RBP20.88■□□□□ 0.93
TRIM28-206ENST00000595974 DDX60Q8IY21 1712 aaKnown RBP20.87■□□□□ 0.93
TRIM28-206ENST00000595974 C21orf2O43822 256 aa20.87■□□□□ 0.93
TRIM28-206ENST00000595974 STK31Q9BXU1 1019 aa20.87■□□□□ 0.93
TRIM28-206ENST00000595974 MYH16Q9H6N6 1097 aa20.87■□□□□ 0.93
TRIM28-206ENST00000595974 RNF181Q9P0P0 153 aa20.87■□□□□ 0.93
TRIM28-206ENST00000595974 ZNF521Q96K83 1311 aa20.86■□□□□ 0.93
TRIM28-206ENST00000595974 NFKBIEO00221 500 aa20.86■□□□□ 0.93
TRIM28-206ENST00000595974 ALDH1B1P30837 517 aa20.86■□□□□ 0.93
TRIM28-206ENST00000595974 RIC3Q7Z5B4 369 aa20.86■□□□□ 0.93
TRIM28-206ENST00000595974 ISCA1Q9BUE6 129 aa20.86■□□□□ 0.93
TRIM28-206ENST00000595974 SH3TC1Q8TE82 1336 aa20.85■□□□□ 0.93
TRIM28-206ENST00000595974 LTBP3Q9NS15 1303 aa20.85■□□□□ 0.93
TRIM28-206ENST00000595974 ZC3H4Q9UPT8 1303 aaKnown RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 DDX58O95786 925 aaKnown RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 LMNB1P20700 586 aa20.85■□□□□ 0.93
TRIM28-206ENST00000595974 SLC10A5Q5PT55 438 aa20.85■□□□□ 0.93
TRIM28-206ENST00000595974 RPGRQ92834 1020 aaKnown RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 GPBP1L1Q9HC44 474 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 ZNF219Q9P2Y4 722 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 TRMT112Q9UI30 125 aaKnown RBP20.85■□□□□ 0.93
TRIM28-206ENST00000595974 HOXA10P31260 410 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-206ENST00000595974 TRIM28Q13263 835 aaKnown RBP20.84■□□□□ 0.93
TRIM28-206ENST00000595974 NLRP3Q96P20 1036 aa20.84■□□□□ 0.93
TRIM28-206ENST00000595974 CCDC93Q567U6 631 aa20.83■□□□□ 0.93
TRIM28-206ENST00000595974 C7orf43Q8WVR3 580 aa20.83■□□□□ 0.93
TRIM28-206ENST00000595974 SPINK5Q9NQ38 1064 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-206ENST00000595974 ATP5J2-PTCD1G3V325 749 aa20.82■□□□□ 0.92
TRIM28-206ENST00000595974 EXOSC9Q06265 439 aaKnown RBP20.82■□□□□ 0.92
TRIM28-206ENST00000595974 ZNF526Q8TF50 670 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-206ENST00000595974 RBM17Q96I25 401 aaKnown RBP20.82■□□□□ 0.92
TRIM28-206ENST00000595974 TAOK3Q9H2K8 898 aa20.82■□□□□ 0.92
TRIM28-206ENST00000595974 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
TRIM28-206ENST00000595974 CRAMP1Q96RY5 1269 aa20.81■□□□□ 0.92
TRIM28-206ENST00000595974 VAMP4O75379 141 aa20.8■□□□□ 0.92
TRIM28-206ENST00000595974 PRELPP51888 382 aa20.8■□□□□ 0.92
TRIM28-206ENST00000595974 TCERG1O14776 1098 aaKnown RBP20.79■□□□□ 0.92
TRIM28-206ENST00000595974 SLC4A2P04920 1241 aa20.79■□□□□ 0.92
TRIM28-206ENST00000595974 HCLS1P14317 486 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-206ENST00000595974 KSR2Q6VAB6 950 aa20.79■□□□□ 0.92
TRIM28-206ENST00000595974 MYD88Q99836 296 aa20.79■□□□□ 0.92
TRIM28-206ENST00000595974 METTL22Q9BUU2 404 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-206ENST00000595974 SNED1Q8TER0 1413 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 DIEXFQ68CQ4 756 aaKnown RBP20.78■□□□□ 0.92
TRIM28-206ENST00000595974 RTKN2Q8IZC4 609 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 SYNE4Q8N205 404 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 CCDC191Q8NCU4 936 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 MAP3K2Q9Y2U5 619 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 MYH3P11055 1940 aa20.78■□□□□ 0.92
TRIM28-206ENST00000595974 TAF1P21675 1872 aa20.77■□□□□ 0.92
TRIM28-206ENST00000595974 PI4KAP2A4QPH2 592 aa20.77■□□□□ 0.92
TRIM28-206ENST00000595974 CC2D2BQ6DHV5 1058 aa20.77■□□□□ 0.92
TRIM28-206ENST00000595974 PI4KAP1Q8N8J0 262 aa20.77■□□□□ 0.92
TRIM28-206ENST00000595974 FAM89AQ96GI7 184 aa20.77■□□□□ 0.92
TRIM28-206ENST00000595974 KDM2BQ8NHM5 1336 aa20.77■□□□□ 0.91
TRIM28-206ENST00000595974 PPEF1O14829 653 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-206ENST00000595974 FKBP4Q02790 459 aaKnown RBP eCLIP20.76■□□□□ 0.91
TRIM28-206ENST00000595974 FLIIQ13045 1269 aa20.76■□□□□ 0.91
TRIM28-206ENST00000595974 ZBTB38Q8NAP3 1195 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-206ENST00000595974 ABCC4O15439 1325 aa20.76■□□□□ 0.91
TRIM28-206ENST00000595974 E9PSI1 815 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 HSP90B1P14625 803 aaKnown RBP20.75■□□□□ 0.91
TRIM28-206ENST00000595974 NEXNQ0ZGT2 675 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 GRIPAP1Q4V328 841 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 OLFM4Q6UX06 510 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 G2E3Q7L622 706 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 ZNF428Q96B54 188 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 CWC25Q9NXE8 425 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-206ENST00000595974 LRRC37AA6NMS7 1700 aa20.75■□□□□ 0.91
TRIM28-206ENST00000595974 PCCAP05165 728 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-206ENST00000595974 IRS4O14654 1257 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-206ENST00000595974 C1QTNF8P60827 252 aa20.73■□□□□ 0.91
TRIM28-206ENST00000595974 FKBP5Q13451 457 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-206ENST00000595974 DDX46Q7L014 1031 aaKnown RBP20.73■□□□□ 0.91
TRIM28-206ENST00000595974 PSMD1Q99460 953 aa20.73■□□□□ 0.91
TRIM28-206ENST00000595974 KIF3CO14782 793 aa20.72■□□□□ 0.91
TRIM28-206ENST00000595974 GRAPQ13588 217 aa20.72■□□□□ 0.91
TRIM28-206ENST00000595974 SF3B3Q15393 1217 aaKnown RBP20.72■□□□□ 0.91
TRIM28-206ENST00000595974 RTL5Q5HYW3 569 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-206ENST00000595974 GRAPLQ8TC17 118 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-206ENST00000595974 WDR90Q96KV7 1748 aa20.71■□□□□ 0.91
TRIM28-206ENST00000595974 BBOX1O75936 387 aa20.71■□□□□ 0.91
TRIM28-206ENST00000595974 IGKV5-2P06315 115 aa20.71■□□□□ 0.91
TRIM28-206ENST00000595974 TMX4Q9H1E5 349 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-206ENST00000595974 NMRK2Q9NPI5 230 aa20.71■□□□□ 0.91
TRIM28-206ENST00000595974 ATP6V0A2Q9Y487 856 aa20.71■□□□□ 0.91
TRIM28-206ENST00000595974 GLTPD2A6NH11 291 aa20.7■□□□□ 0.9
TRIM28-206ENST00000595974 SLFN5Q08AF3 891 aa20.7■□□□□ 0.9
TRIM28-206ENST00000595974 TMC4Q7Z404 712 aa20.7■□□□□ 0.9
TRIM28-206ENST00000595974 MIER1Q8N108 512 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms