RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SCN4AP35499 1836 aa31.42■■■□□ 2.62
LSM4-202ENST00000593564 EIF2S2P20042 333 aaKnown RBP31.41■■■□□ 2.62
LSM4-202ENST00000593564 LDHDQ86WU2 507 aa31.41■■■□□ 2.62
LSM4-202ENST00000593564 FZD9O00144 591 aa31.4■■■□□ 2.62
LSM4-202ENST00000593564 PARP10Q53GL7 1025 aa31.4■■■□□ 2.62
LSM4-202ENST00000593564 PPP1R42Q7Z4L9 355 aa31.4■■■□□ 2.62
LSM4-202ENST00000593564 CREBZFQ9NS37 354 aa31.39■■■□□ 2.62
LSM4-202ENST00000593564 MYBBP1AQ9BQG0 1328 aaKnown RBP31.39■■■□□ 2.62
LSM4-202ENST00000593564 PROSER3Q2NL68 480 aa31.38■■■□□ 2.61
LSM4-202ENST00000593564 GRIPAP1Q4V328 841 aa31.38■■■□□ 2.61
LSM4-202ENST00000593564 RBM17Q96I25 401 aaKnown RBP31.38■■■□□ 2.61
LSM4-202ENST00000593564 CRAMP1Q96RY5 1269 aa31.38■■■□□ 2.61
LSM4-202ENST00000593564 HACL1Q9UJ83 578 aa31.37■■■□□ 2.61
LSM4-202ENST00000593564 DDX10Q13206 875 aaKnown RBP31.36■■■□□ 2.61
LSM4-202ENST00000593564 C3orf67Q6ZVT6 689 aa31.35■■■□□ 2.61
LSM4-202ENST00000593564 JDP2Q8WYK2 163 aa31.35■■■□□ 2.61
LSM4-202ENST00000593564 PASKQ96RG2 1323 aa31.34■■■□□ 2.61
LSM4-202ENST00000593564 ANXA1P04083 346 aa31.34■■■□□ 2.61
LSM4-202ENST00000593564 COL13A1Q5TAT6 717 aaPredicted RBP31.34■■■□□ 2.61
LSM4-202ENST00000593564 GPC2Q8N158 579 aa31.34■■■□□ 2.61
LSM4-202ENST00000593564 UTP14AQ9BVJ6 771 aaKnown RBP31.34■■■□□ 2.61
LSM4-202ENST00000593564 PPEF1O14829 653 aaPredicted RBP31.33■■■□□ 2.61
LSM4-202ENST00000593564 CCDC146Q8IYE0 955 aa31.33■■■□□ 2.61
LSM4-202ENST00000593564 NLRP3Q96P20 1036 aa31.33■■■□□ 2.61
LSM4-202ENST00000593564 EPHX2P34913 555 aa31.32■■■□□ 2.6
LSM4-202ENST00000593564 EAPPQ56P03 285 aaPredicted RBP31.32■■■□□ 2.6
LSM4-202ENST00000593564 SLC10A5Q5PT55 438 aa31.32■■■□□ 2.6
LSM4-202ENST00000593564 RNF123Q5XPI4 1314 aa31.31■■■□□ 2.6
LSM4-202ENST00000593564 CHL1O00533 1208 aa31.31■■■□□ 2.6
LSM4-202ENST00000593564 HSPA1AP0DMV8 641 aaKnown RBP31.31■■■□□ 2.6
LSM4-202ENST00000593564 HSPA1BP0DMV9 641 aaKnown RBP31.31■■■□□ 2.6
LSM4-202ENST00000593564 NEUROD2Q15784 382 aa31.31■■■□□ 2.6
LSM4-202ENST00000593564 HSP90AB3PQ58FF7 597 aa31.31■■■□□ 2.6
LSM4-202ENST00000593564 COL4A5P29400 1685 aa31.3■■■□□ 2.6
LSM4-202ENST00000593564 COPS6Q7L5N1 327 aa31.3■■■□□ 2.6
LSM4-202ENST00000593564 PNMA8AQ86V59 439 aaPredicted RBP31.3■■■□□ 2.6
LSM4-202ENST00000593564 RUNDC1Q96C34 613 aa31.3■■■□□ 2.6
LSM4-202ENST00000593564 EIF6P56537 245 aaKnown RBP31.29■■■□□ 2.6
LSM4-202ENST00000593564 XAGE3Q8WTP9 111 aa31.29■■■□□ 2.6
LSM4-202ENST00000593564 NECTIN2Q92692 538 aa31.29■■■□□ 2.6
LSM4-202ENST00000593564 ADAMTSL1Q8N6G6 1762 aa31.29■■■□□ 2.6
LSM4-202ENST00000593564 ITGBL1O95965 494 aaPredicted RBP31.28■■■□□ 2.6
LSM4-202ENST00000593564 WDR43Q15061 677 aaKnown RBP eCLIP31.28■■■□□ 2.6
LSM4-202ENST00000593564 LARGE2Q8N3Y3 721 aa31.28■■■□□ 2.6
LSM4-202ENST00000593564 DDX21Q9NR30 783 aaKnown RBP eCLIP31.28■■■□□ 2.6
LSM4-202ENST00000593564 MKRN1Q9UHC7 482 aaKnown RBP31.28■■■□□ 2.6
LSM4-202ENST00000593564 TRIM35Q9UPQ4 493 aa31.28■■■□□ 2.6
LSM4-202ENST00000593564 TCERG1O14776 1098 aaKnown RBP31.27■■■□□ 2.6
LSM4-202ENST00000593564 SLC51AQ86UW1 340 aa31.27■■■□□ 2.6
LSM4-202ENST00000593564 CLEC11AQ9Y240 323 aa31.27■■■□□ 2.6
LSM4-202ENST00000593564 AIMP1Q12904 312 aaKnown RBP31.26■■■□□ 2.59
LSM4-202ENST00000593564 KRT24Q2M2I5 525 aa31.26■■■□□ 2.59
LSM4-202ENST00000593564 NLRP10Q86W26 655 aa31.26■■■□□ 2.59
LSM4-202ENST00000593564 ATP6V0A2Q9Y487 856 aa31.26■■■□□ 2.59
LSM4-202ENST00000593564 TCIRG1Q13488 830 aa31.25■■■□□ 2.59
LSM4-202ENST00000593564 TMX4Q9H1E5 349 aaPredicted RBP31.25■■■□□ 2.59
LSM4-202ENST00000593564 CNTNAP1P78357 1384 aa31.25■■■□□ 2.59
LSM4-202ENST00000593564 ABCC4O15439 1325 aa31.24■■■□□ 2.59
LSM4-202ENST00000593564 LAS1LQ9Y4W2 734 aaKnown RBP31.24■■■□□ 2.59
LSM4-202ENST00000593564 GJA3Q9Y6H8 435 aa31.24■■■□□ 2.59
LSM4-202ENST00000593564 ANKRD36CQ5JPF3 1778 aa31.23■■■□□ 2.59
LSM4-202ENST00000593564 TMEM88BA6NKF7 163 aa31.23■■■□□ 2.59
LSM4-202ENST00000593564 ADAMTS8Q9UP79 889 aa31.23■■■□□ 2.59
LSM4-202ENST00000593564 HOXB7P09629 217 aa31.22■■■□□ 2.59
LSM4-202ENST00000593564 VPS33BQ9H267 617 aa31.22■■■□□ 2.59
LSM4-202ENST00000593564 CHPF2Q9P2E5 772 aa31.22■■■□□ 2.59
LSM4-202ENST00000593564 LMOD1P29536 600 aaPredicted RBP31.21■■■□□ 2.59
LSM4-202ENST00000593564 MAP1SQ66K74 1059 aaPredicted RBP31.21■■■□□ 2.59
LSM4-202ENST00000593564 NIM1KQ8IY84 436 aa31.21■■■□□ 2.59
LSM4-202ENST00000593564 CNTROBQ8N137 903 aa31.21■■■□□ 2.59
LSM4-202ENST00000593564 SH3TC1Q8TE82 1336 aa31.21■■■□□ 2.59
LSM4-202ENST00000593564 PPIP5K2O43314 1243 aa31.2■■■□□ 2.59
LSM4-202ENST00000593564 BBOX1O75936 387 aa31.2■■■□□ 2.59
LSM4-202ENST00000593564 HCLS1P14317 486 aaPredicted RBP31.2■■■□□ 2.59
LSM4-202ENST00000593564 TRMT112Q9UI30 125 aaKnown RBP31.2■■■□□ 2.59
LSM4-202ENST00000593564 SCNN1DP51172 638 aa31.19■■■□□ 2.58
LSM4-202ENST00000593564 HDGFL1Q5TGJ6 251 aa31.19■■■□□ 2.58
LSM4-202ENST00000593564 TNS4Q8IZW8 715 aa31.19■■■□□ 2.58
LSM4-202ENST00000593564 RTFDC1Q9BY42 306 aaPredicted RBP31.19■■■□□ 2.58
LSM4-202ENST00000593564 SUPT20HQ8NEM7 779 aa31.18■■■□□ 2.58
LSM4-202ENST00000593564 LTBP1Q14766 1721 aa31.18■■■□□ 2.58
LSM4-202ENST00000593564 AOC3Q16853 763 aa31.17■■■□□ 2.58
LSM4-202ENST00000593564 SP8Q8IXZ3 490 aa31.17■■■□□ 2.58
LSM4-202ENST00000593564 PLBD2Q8NHP8 589 aa31.17■■■□□ 2.58
LSM4-202ENST00000593564 CFAP44Q96MT7 982 aa31.17■■■□□ 2.58
LSM4-202ENST00000593564 LAMB2P55268 1798 aa31.16■■■□□ 2.58
LSM4-202ENST00000593564 DDX46Q7L014 1031 aaKnown RBP31.16■■■□□ 2.58
LSM4-202ENST00000593564 DBF4Q9UBU7 674 aaPredicted RBP31.16■■■□□ 2.58
LSM4-202ENST00000593564 EPS15P42566 896 aa31.15■■■□□ 2.58
LSM4-202ENST00000593564 GRAPQ13588 217 aa31.14■■■□□ 2.58
LSM4-202ENST00000593564 DPP8Q6V1X1 898 aaPredicted RBP31.14■■■□□ 2.58
LSM4-202ENST00000593564 ANKRD13DQ6ZTN6 518 aa31.14■■■□□ 2.58
LSM4-202ENST00000593564 GRAPLQ8TC17 118 aaPredicted RBP31.14■■■□□ 2.58
LSM4-202ENST00000593564 PRKRIP1Q9H875 184 aaPredicted RBP31.14■■■□□ 2.58
LSM4-202ENST00000593564 VEGFBP49765 207 aa31.13■■■□□ 2.57
LSM4-202ENST00000593564 USP50Q70EL3 339 aaPredicted RBP31.13■■■□□ 2.57
LSM4-202ENST00000593564 MPNDQ8N594 471 aa31.13■■■□□ 2.57
LSM4-202ENST00000593564 ZNRF3Q9ULT6 936 aa31.13■■■□□ 2.57
LSM4-202ENST00000593564 ISCA1Q9BUE6 129 aa31.12■■■□□ 2.57
LSM4-202ENST00000593564 RASSF10A6NK89 507 aa31.11■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms