RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	PRELP	P51888	382 aa		22.35	■■□□□ 1.17
MBD1-221	ENST00000589867	CRY2	Q49AN0	593 aa		22.35	■■□□□ 1.17
MBD1-221	ENST00000589867	G2E3	Q7L622	706 aa		22.35	■■□□□ 1.17
MBD1-221	ENST00000589867	MASTL	Q96GX5	879 aa		22.35	■■□□□ 1.17
MBD1-221	ENST00000589867	HSP90AB3P	Q58FF7	597 aa		22.34	■■□□□ 1.17
MBD1-221	ENST00000589867	C7orf43	Q8WVR3	580 aa		22.34	■■□□□ 1.17
MBD1-221	ENST00000589867	SLC10A5	Q5PT55	438 aa		22.33	■■□□□ 1.17
MBD1-221	ENST00000589867	ZNF428	Q96B54	188 aa		22.33	■■□□□ 1.17
MBD1-221	ENST00000589867	UTP14A	Q9BVJ6	771 aa	Known RBP	22.33	■■□□□ 1.17
MBD1-221	ENST00000589867	FER1L6	Q2WGJ9	1857 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	ATP5J2-PTCD1	G3V325	749 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	NPR1	P16066	1061 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	GOLGA2	Q08379	1002 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	PPP1R42	Q7Z4L9	355 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	LAMB2	P55268	1798 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	CACNA1F	O60840	1977 aa		22.32	■■□□□ 1.16
MBD1-221	ENST00000589867	NFKBIE	O00221	500 aa		22.31	■■□□□ 1.16
MBD1-221	ENST00000589867	GTF2E1	P29083	439 aa	Predicted RBP	22.31	■■□□□ 1.16
MBD1-221	ENST00000589867	RASSF7	Q02833	373 aa		22.31	■■□□□ 1.16
MBD1-221	ENST00000589867	TRIM28	Q13263	835 aa	Known RBP	22.31	■■□□□ 1.16
MBD1-221	ENST00000589867	PRPF40B	Q6NWY9	871 aa	Known RBP	22.31	■■□□□ 1.16
MBD1-221	ENST00000589867	CNKSR1	Q969H4	720 aa		22.3	■■□□□ 1.16
MBD1-221	ENST00000589867	MYH16	Q9H6N6	1097 aa		22.3	■■□□□ 1.16
MBD1-221	ENST00000589867	DDX60	Q8IY21	1712 aa	Known RBP	22.3	■■□□□ 1.16
MBD1-221	ENST00000589867	CCDC88A	Q3V6T2	1871 aa		22.29	■■□□□ 1.16
MBD1-221	ENST00000589867	C21orf2	O43822	256 aa		22.29	■■□□□ 1.16
MBD1-221	ENST00000589867	SLC4A2	P04920	1241 aa		22.29	■■□□□ 1.16
MBD1-221	ENST00000589867	SLC51A	Q86UW1	340 aa		22.29	■■□□□ 1.16
MBD1-221	ENST00000589867	HOXA10	P31260	410 aa	Predicted RBP	22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	SLFN5	Q08AF3	891 aa		22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	RIC3	Q7Z5B4	369 aa		22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	CDCA7L	Q96GN5	454 aa		22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	ZNF219	Q9P2Y4	722 aa	Predicted RBP	22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	RNF123	Q5XPI4	1314 aa		22.28	■■□□□ 1.16
MBD1-221	ENST00000589867	HCLS1	P14317	486 aa	Predicted RBP	22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	C9orf131	Q5VYM1	1079 aa		22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	OLFM4	Q6UX06	510 aa		22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	SNED1	Q8TER0	1413 aa		22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	METTL22	Q9BUU2	404 aa	Predicted RBP	22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	CHMP4A	Q9BY43	222 aa		22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	TRMT112	Q9UI30	125 aa	Known RBP	22.27	■■□□□ 1.16
MBD1-221	ENST00000589867	PI4KAP2	A4QPH2	592 aa		22.26	■■□□□ 1.15
MBD1-221	ENST00000589867	TRMT2A	Q8IZ69	625 aa	Known RBP	22.26	■■□□□ 1.15
MBD1-221	ENST00000589867	PI4KAP1	Q8N8J0	262 aa		22.26	■■□□□ 1.15
MBD1-221	ENST00000589867	STK31	Q9BXU1	1019 aa		22.26	■■□□□ 1.15
MBD1-221	ENST00000589867	IGKV5-2	P06315	115 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	KSR2	Q6VAB6	950 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	FAM89A	Q96GI7	184 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	MYD88	Q99836	296 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	MAP3K2	Q9Y2U5	619 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	SH3TC1	Q8TE82	1336 aa		22.25	■■□□□ 1.15
MBD1-221	ENST00000589867	TAF1	P21675	1872 aa		22.24	■■□□□ 1.15
MBD1-221	ENST00000589867	FLII	Q13045	1269 aa		22.24	■■□□□ 1.15
MBD1-221	ENST00000589867	COL4A1	P02462	1669 aa		22.23	■■□□□ 1.15
MBD1-221	ENST00000589867		E9PSI1	815 aa		22.23	■■□□□ 1.15
MBD1-221	ENST00000589867	NLRP3	Q96P20	1036 aa		22.23	■■□□□ 1.15
MBD1-221	ENST00000589867	CRAMP1	Q96RY5	1269 aa		22.23	■■□□□ 1.15
MBD1-221	ENST00000589867	RNF181	Q9P0P0	153 aa		22.22	■■□□□ 1.15
MBD1-221	ENST00000589867	DDX58	O95786	925 aa	Known RBP	22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	ALDH1B1	P30837	517 aa		22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	RTL5	Q5HYW3	569 aa	Predicted RBP	22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	CCDC191	Q8NCU4	936 aa		22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	LTBP3	Q9NS15	1303 aa		22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	DICER1	Q9UPY3	1922 aa	Known RBP	22.21	■■□□□ 1.15
MBD1-221	ENST00000589867	JARID2	Q92833	1246 aa	Predicted RBP	22.2	■■□□□ 1.14
MBD1-221	ENST00000589867	RPGR	Q92834	1020 aa	Known RBP	22.2	■■□□□ 1.14
MBD1-221	ENST00000589867	LMNB1	P20700	586 aa		22.19	■■□□□ 1.14
MBD1-221	ENST00000589867	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	22.19	■■□□□ 1.14
MBD1-221	ENST00000589867	ABCC4	O15439	1325 aa		22.19	■■□□□ 1.14
MBD1-221	ENST00000589867	PCCA	P05165	728 aa	Predicted RBP	22.18	■■□□□ 1.14
MBD1-221	ENST00000589867	CWF19L2	Q2TBE0	894 aa	Known RBP	22.18	■■□□□ 1.14
MBD1-221	ENST00000589867	RBM17	Q96I25	401 aa	Known RBP	22.18	■■□□□ 1.14
MBD1-221	ENST00000589867	CWC25	Q9NXE8	425 aa	Predicted RBP	22.18	■■□□□ 1.14
MBD1-221	ENST00000589867	TIAM2	Q8IVF5	1701 aa		22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	NEURL1B	A8MQ27	555 aa		22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	IRS4	O14654	1257 aa	Predicted RBP	22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	SF3B3	Q15393	1217 aa	Known RBP	22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	CCDC93	Q567U6	631 aa		22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	ZNF526	Q8TF50	670 aa	Predicted RBP	22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	TAOK3	Q9H2K8	898 aa		22.17	■■□□□ 1.14
MBD1-221	ENST00000589867	FKBP5	Q13451	457 aa	Predicted RBP	22.16	■■□□□ 1.14
MBD1-221	ENST00000589867	SOGA3	Q5TF21	947 aa		22.16	■■□□□ 1.14
MBD1-221	ENST00000589867	DNAAF4	Q8WXU2	420 aa		22.16	■■□□□ 1.14
MBD1-221	ENST00000589867		F6X3S4	739 aa		22.15	■■□□□ 1.14
MBD1-221	ENST00000589867	MRPL50	Q8N5N7	158 aa	Known RBP	22.15	■■□□□ 1.14
MBD1-221	ENST00000589867	PPEF1	O14829	653 aa	Predicted RBP	22.14	■■□□□ 1.13
MBD1-221	ENST00000589867	FKBP4	Q02790	459 aa	Known RBP eCLIP	22.14	■■□□□ 1.13
MBD1-221	ENST00000589867	CASP7	P55210	303 aa		22.13	■■□□□ 1.13
MBD1-221	ENST00000589867	SSH1	Q8WYL5	1049 aa		22.13	■■□□□ 1.13
MBD1-221	ENST00000589867	COL4A5	P29400	1685 aa		22.13	■■□□□ 1.13
MBD1-221	ENST00000589867	CDHR2	Q9BYE9	1310 aa		22.12	■■□□□ 1.13
MBD1-221	ENST00000589867		H7C1W4	665 aa		22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	GRAP	Q13588	217 aa		22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	BEND3	Q5T5X7	828 aa		22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	RTKN2	Q8IZC4	609 aa		22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	GRAPL	Q8TC17	118 aa	Predicted RBP	22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	CELF1	Q92879	486 aa	Known RBP	22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	GPBP1L1	Q9HC44	474 aa	Predicted RBP	22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	ZNF277	Q9NRM2	450 aa	Predicted RBP	22.12	■■□□□ 1.13
MBD1-221	ENST00000589867	ATP6V0A2	Q9Y487	856 aa		22.12	■■□□□ 1.13

Retrieved 100 of 20,778 RNA–protein pairs in 254.7 ms