RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ATP5J2-PTCD1G3V325 749 aa25.92■■□□□ 1.74
SS18-218ENST00000581021 GTF2E1P29083 439 aaPredicted RBP25.92■■□□□ 1.74
SS18-218ENST00000581021 STYK1Q6J9G0 422 aa25.92■■□□□ 1.74
SS18-218ENST00000581021 SLX4Q8IY92 1834 aa25.92■■□□□ 1.74
SS18-218ENST00000581021 CRY2Q49AN0 593 aa25.91■■□□□ 1.74
SS18-218ENST00000581021 MASTLQ96GX5 879 aa25.91■■□□□ 1.74
SS18-218ENST00000581021 UTP14AQ9BVJ6 771 aaKnown RBP25.91■■□□□ 1.74
SS18-218ENST00000581021 CACNA1SQ13698 1873 aa25.9■■□□□ 1.74
SS18-218ENST00000581021 PPP1R42Q7Z4L9 355 aa25.9■■□□□ 1.74
SS18-218ENST00000581021 PRPF40BQ6NWY9 871 aaKnown RBP25.89■■□□□ 1.74
SS18-218ENST00000581021 ZNF784Q8NCA9 323 aaPredicted RBP25.89■■□□□ 1.74
SS18-218ENST00000581021 CDCA7LQ96GN5 454 aa25.89■■□□□ 1.74
SS18-218ENST00000581021 STK31Q9BXU1 1019 aa25.89■■□□□ 1.74
SS18-218ENST00000581021 SLC4A2P04920 1241 aa25.88■■□□□ 1.73
SS18-218ENST00000581021 NPR1P16066 1061 aa25.88■■□□□ 1.73
SS18-218ENST00000581021 PRELPP51888 382 aa25.88■■□□□ 1.73
SS18-218ENST00000581021 RIC3Q7Z5B4 369 aa25.88■■□□□ 1.73
SS18-218ENST00000581021 RASSF7Q02833 373 aa25.87■■□□□ 1.73
SS18-218ENST00000581021 SLC10A5Q5PT55 438 aa25.87■■□□□ 1.73
SS18-218ENST00000581021 CNKSR1Q969H4 720 aa25.87■■□□□ 1.73
SS18-218ENST00000581021 CHMP4AQ9BY43 222 aa25.87■■□□□ 1.73
SS18-218ENST00000581021 ZNF219Q9P2Y4 722 aaPredicted RBP25.87■■□□□ 1.73
SS18-218ENST00000581021 C21orf2O43822 256 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 SLFN5Q08AF3 891 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 SLC51AQ86UW1 340 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 MYD88Q99836 296 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 TRMT112Q9UI30 125 aaKnown RBP25.86■■□□□ 1.73
SS18-218ENST00000581021 MAP3K2Q9Y2U5 619 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 RNF123Q5XPI4 1314 aa25.86■■□□□ 1.73
SS18-218ENST00000581021 LAMB2P55268 1798 aa25.85■■□□□ 1.73
SS18-218ENST00000581021 E9PSI1 815 aa25.85■■□□□ 1.73
SS18-218ENST00000581021 NFKBIEO00221 500 aa25.85■■□□□ 1.73
SS18-218ENST00000581021 HCLS1P14317 486 aaPredicted RBP25.85■■□□□ 1.73
SS18-218ENST00000581021 TRIM28Q13263 835 aaKnown RBP25.85■■□□□ 1.73
SS18-218ENST00000581021 C7orf43Q8WVR3 580 aa25.85■■□□□ 1.73
SS18-218ENST00000581021 DDX60Q8IY21 1712 aaKnown RBP25.85■■□□□ 1.73
SS18-218ENST00000581021 PI4KAP2A4QPH2 592 aa25.84■■□□□ 1.73
SS18-218ENST00000581021 OLFM4Q6UX06 510 aa25.84■■□□□ 1.73
SS18-218ENST00000581021 PI4KAP1Q8N8J0 262 aa25.84■■□□□ 1.73
SS18-218ENST00000581021 METTL22Q9BUU2 404 aaPredicted RBP25.84■■□□□ 1.73
SS18-218ENST00000581021 SH3TC1Q8TE82 1336 aa25.84■■□□□ 1.73
SS18-218ENST00000581021 FLIIQ13045 1269 aa25.83■■□□□ 1.73
SS18-218ENST00000581021 KSR2Q6VAB6 950 aa25.83■■□□□ 1.73
SS18-218ENST00000581021 DDX58O95786 925 aaKnown RBP25.82■■□□□ 1.72
SS18-218ENST00000581021 HOXA10P31260 410 aaPredicted RBP25.82■■□□□ 1.72
SS18-218ENST00000581021 TRMT2AQ8IZ69 625 aaKnown RBP25.82■■□□□ 1.72
SS18-218ENST00000581021 FAM89AQ96GI7 184 aa25.82■■□□□ 1.72
SS18-218ENST00000581021 SBF1O95248 1867 aa25.81■■□□□ 1.72
SS18-218ENST00000581021 FER1L6Q2WGJ9 1857 aa25.81■■□□□ 1.72
SS18-218ENST00000581021 IGKV5-2P06315 115 aa25.81■■□□□ 1.72
SS18-218ENST00000581021 C9orf131Q5VYM1 1079 aa25.81■■□□□ 1.72
SS18-218ENST00000581021 SNED1Q8TER0 1413 aa25.8■■□□□ 1.72
SS18-218ENST00000581021 RTL5Q5HYW3 569 aaPredicted RBP25.8■■□□□ 1.72
SS18-218ENST00000581021 RPGRQ92834 1020 aaKnown RBP25.79■■□□□ 1.72
SS18-218ENST00000581021 COL4A1P02462 1669 aa25.79■■□□□ 1.72
SS18-218ENST00000581021 JARID2Q92833 1246 aaPredicted RBP25.78■■□□□ 1.72
SS18-218ENST00000581021 NLRP3Q96P20 1036 aa25.78■■□□□ 1.72
SS18-218ENST00000581021 CACNA1FO60840 1977 aa25.78■■□□□ 1.72
SS18-218ENST00000581021 FKBP5Q13451 457 aaPredicted RBP25.77■■□□□ 1.72
SS18-218ENST00000581021 CCDC191Q8NCU4 936 aa25.77■■□□□ 1.72
SS18-218ENST00000581021 RNF181Q9P0P0 153 aa25.77■■□□□ 1.72
SS18-218ENST00000581021 ALDH1B1P30837 517 aa25.76■■□□□ 1.71
SS18-218ENST00000581021 CWF19L2Q2TBE0 894 aaKnown RBP25.76■■□□□ 1.71
SS18-218ENST00000581021 ZBTB38Q8NAP3 1195 aaPredicted RBP25.76■■□□□ 1.71
SS18-218ENST00000581021 CRAMP1Q96RY5 1269 aa25.76■■□□□ 1.71
SS18-218ENST00000581021 CWC25Q9NXE8 425 aaPredicted RBP25.76■■□□□ 1.71
SS18-218ENST00000581021 ABCC4O15439 1325 aa25.76■■□□□ 1.71
SS18-218ENST00000581021 NEURL1BA8MQ27 555 aa25.74■■□□□ 1.71
SS18-218ENST00000581021 F6X3S4 739 aa25.74■■□□□ 1.71
SS18-218ENST00000581021 IRS4O14654 1257 aaPredicted RBP25.74■■□□□ 1.71
SS18-218ENST00000581021 RBM17Q96I25 401 aaKnown RBP25.74■■□□□ 1.71
SS18-218ENST00000581021 LTBP3Q9NS15 1303 aa25.73■■□□□ 1.71
SS18-218ENST00000581021 PCCAP05165 728 aaPredicted RBP25.73■■□□□ 1.71
SS18-218ENST00000581021 LMNB1P20700 586 aa25.73■■□□□ 1.71
SS18-218ENST00000581021 CCDC93Q567U6 631 aa25.73■■□□□ 1.71
SS18-218ENST00000581021 ZNF526Q8TF50 670 aaPredicted RBP25.73■■□□□ 1.71
SS18-218ENST00000581021 DNAAF4Q8WXU2 420 aa25.73■■□□□ 1.71
SS18-218ENST00000581021 TAOK3Q9H2K8 898 aa25.73■■□□□ 1.71
SS18-218ENST00000581021 TAF1P21675 1872 aa25.72■■□□□ 1.71
SS18-218ENST00000581021 TIAM2Q8IVF5 1701 aa25.72■■□□□ 1.71
SS18-218ENST00000581021 PPEF1O14829 653 aaPredicted RBP25.71■■□□□ 1.71
SS18-218ENST00000581021 SF3B3Q15393 1217 aaKnown RBP25.71■■□□□ 1.71
SS18-218ENST00000581021 SOGA3Q5TF21 947 aa25.71■■□□□ 1.71
SS18-218ENST00000581021 MRPL50Q8N5N7 158 aaKnown RBP25.71■■□□□ 1.71
SS18-218ENST00000581021 SSH1Q8WYL5 1049 aa25.71■■□□□ 1.71
SS18-218ENST00000581021 CCDC88AQ3V6T2 1871 aa25.7■■□□□ 1.71
SS18-218ENST00000581021 HNRNPUQ00839 825 aaKnown RBP eCLIP25.7■■□□□ 1.7
SS18-218ENST00000581021 NEXNQ0ZGT2 675 aa25.7■■□□□ 1.7
SS18-218ENST00000581021 BCL2L13Q9BXK5 485 aa25.69■■□□□ 1.7
SS18-218ENST00000581021 CDHR2Q9BYE9 1310 aa25.67■■□□□ 1.7
SS18-218ENST00000581021 FKBP4Q02790 459 aaKnown RBP eCLIP25.67■■□□□ 1.7
SS18-218ENST00000581021 GCKRQ14397 625 aa25.67■■□□□ 1.7
SS18-218ENST00000581021 BEND3Q5T5X7 828 aa25.67■■□□□ 1.7
SS18-218ENST00000581021 LINS1Q8NG48 757 aa25.67■■□□□ 1.7
SS18-218ENST00000581021 ZNF277Q9NRM2 450 aaPredicted RBP25.67■■□□□ 1.7
SS18-218ENST00000581021 CASP7P55210 303 aa25.66■■□□□ 1.7
SS18-218ENST00000581021 GRAPQ13588 217 aa25.66■■□□□ 1.7
SS18-218ENST00000581021 DDX46Q7L014 1031 aaKnown RBP25.66■■□□□ 1.7
SS18-218ENST00000581021 GRAPLQ8TC17 118 aaPredicted RBP25.66■■□□□ 1.7
SS18-218ENST00000581021 CELF1Q92879 486 aaKnown RBP25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms