RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SLC10A5Q5PT55 438 aa19.17■□□□□ 0.66
SS18-212ENST00000579061 CCDC30Q5VVM6 783 aa19.17■□□□□ 0.66
SS18-212ENST00000579061 NLRP10Q86W26 655 aa19.17■□□□□ 0.66
SS18-212ENST00000579061 TSR2Q969E8 191 aaKnown RBP19.17■□□□□ 0.66
SS18-212ENST00000579061 LTBP3Q9NS15 1303 aa19.17■□□□□ 0.66
SS18-212ENST00000579061 ZC3H4Q9UPT8 1303 aaKnown RBP19.17■□□□□ 0.66
SS18-212ENST00000579061 DICER1Q9UPY3 1922 aaKnown RBP19.17■□□□□ 0.66
SS18-212ENST00000579061 CACNA1FO60840 1977 aa19.16■□□□□ 0.66
SS18-212ENST00000579061 SENP3-EIF4A1A0A087X0R7 540 aa19.16■□□□□ 0.66
SS18-212ENST00000579061 NFKBIEO00221 500 aa19.16■□□□□ 0.66
SS18-212ENST00000579061 RASSF7Q02833 373 aa19.16■□□□□ 0.66
SS18-212ENST00000579061 TSPYL6Q8N831 410 aa19.16■□□□□ 0.66
SS18-212ENST00000579061 C7orf43Q8WVR3 580 aa19.15■□□□□ 0.66
SS18-212ENST00000579061 HOXA10P31260 410 aaPredicted RBP19.14■□□□□ 0.65
SS18-212ENST00000579061 NLRP3Q96P20 1036 aa19.14■□□□□ 0.65
SS18-212ENST00000579061 ISCA1Q9BUE6 129 aa19.14■□□□□ 0.65
SS18-212ENST00000579061 GOLGA2Q08379 1002 aa19.13■□□□□ 0.65
SS18-212ENST00000579061 TRIM28Q13263 835 aaKnown RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 TWISTNBQ3B726 338 aaPredicted RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 CCDC93Q567U6 631 aa19.13■□□□□ 0.65
SS18-212ENST00000579061 ZNF526Q8TF50 670 aaPredicted RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 RPGRQ92834 1020 aaKnown RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 PHAXQ9H814 394 aaKnown RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 ZNF219Q9P2Y4 722 aaPredicted RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 SALL2Q9Y467 1007 aaPredicted RBP19.13■□□□□ 0.65
SS18-212ENST00000579061 LAMB2P55268 1798 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 FANCIQ9NVI1 1328 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 PRELPP51888 382 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 C1QTNF8P60827 252 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 RIC3Q7Z5B4 369 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 CRAMP1Q96RY5 1269 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 TAOK3Q9H2K8 898 aa19.12■□□□□ 0.65
SS18-212ENST00000579061 TRMT112Q9UI30 125 aaKnown RBP19.12■□□□□ 0.65
SS18-212ENST00000579061 TIAM2Q8IVF5 1701 aa19.11■□□□□ 0.65
SS18-212ENST00000579061 SH3TC1Q8TE82 1336 aa19.11■□□□□ 0.65
SS18-212ENST00000579061 DDX58O95786 925 aaKnown RBP19.11■□□□□ 0.65
SS18-212ENST00000579061 RBM17Q96I25 401 aaKnown RBP19.11■□□□□ 0.65
SS18-212ENST00000579061 STK31Q9BXU1 1019 aa19.11■□□□□ 0.65
SS18-212ENST00000579061 CCER2I3L3R5 266 aa19.1■□□□□ 0.65
SS18-212ENST00000579061 CC2D2BQ6DHV5 1058 aa19.1■□□□□ 0.65
SS18-212ENST00000579061 RTKN2Q8IZC4 609 aa19.1■□□□□ 0.65
SS18-212ENST00000579061 KDM2BQ8NHM5 1336 aa19.09■□□□□ 0.65
SS18-212ENST00000579061 GRIPAP1Q4V328 841 aa19.09■□□□□ 0.65
SS18-212ENST00000579061 MYH16Q9H6N6 1097 aa19.09■□□□□ 0.65
SS18-212ENST00000579061 ATP5J2-PTCD1G3V325 749 aa19.08■□□□□ 0.64
SS18-212ENST00000579061 KIF3CO14782 793 aa19.08■□□□□ 0.64
SS18-212ENST00000579061 C3orf67Q6ZVT6 689 aa19.08■□□□□ 0.64
SS18-212ENST00000579061 DDX60Q8IY21 1712 aaKnown RBP19.08■□□□□ 0.64
SS18-212ENST00000579061 ZNF521Q96K83 1311 aa19.07■□□□□ 0.64
SS18-212ENST00000579061 FKBP4Q02790 459 aaKnown RBP eCLIP19.07■□□□□ 0.64
SS18-212ENST00000579061 SYNE4Q8N205 404 aa19.07■□□□□ 0.64
SS18-212ENST00000579061 METTL22Q9BUU2 404 aaPredicted RBP19.07■□□□□ 0.64
SS18-212ENST00000579061 SNED1Q8TER0 1413 aa19.07■□□□□ 0.64
SS18-212ENST00000579061 VAMP4O75379 141 aa19.06■□□□□ 0.64
SS18-212ENST00000579061 HCLS1P14317 486 aaPredicted RBP19.06■□□□□ 0.64
SS18-212ENST00000579061 EXOSC9Q06265 439 aaKnown RBP19.06■□□□□ 0.64
SS18-212ENST00000579061 KSR2Q6VAB6 950 aa19.06■□□□□ 0.64
SS18-212ENST00000579061 CCDC191Q8NCU4 936 aa19.06■□□□□ 0.64
SS18-212ENST00000579061 SPINK5Q9NQ38 1064 aaPredicted RBP19.06■□□□□ 0.64
SS18-212ENST00000579061 GLTPD2A6NH11 291 aa19.05■□□□□ 0.64
SS18-212ENST00000579061 SLC4A2P04920 1241 aa19.05■□□□□ 0.64
SS18-212ENST00000579061 PSMD1Q99460 953 aa19.05■□□□□ 0.64
SS18-212ENST00000579061 MYD88Q99836 296 aa19.05■□□□□ 0.64
SS18-212ENST00000579061 NMRK2Q9NPI5 230 aa19.05■□□□□ 0.64
SS18-212ENST00000579061 PPEF1O14829 653 aaPredicted RBP19.04■□□□□ 0.64
SS18-212ENST00000579061 BBOX1O75936 387 aa19.04■□□□□ 0.64
SS18-212ENST00000579061 HSP90B1P14625 803 aaKnown RBP19.04■□□□□ 0.64
SS18-212ENST00000579061 FAM89AQ96GI7 184 aa19.04■□□□□ 0.64
SS18-212ENST00000579061 MAP3K2Q9Y2U5 619 aa19.04■□□□□ 0.64
SS18-212ENST00000579061 PI4KAP2A4QPH2 592 aa19.03■□□□□ 0.64
SS18-212ENST00000579061 SF3B3Q15393 1217 aaKnown RBP19.03■□□□□ 0.64
SS18-212ENST00000579061 DPY19L2Q6NUT2 758 aa19.03■□□□□ 0.64
SS18-212ENST00000579061 OLFM4Q6UX06 510 aa19.03■□□□□ 0.64
SS18-212ENST00000579061 DDX46Q7L014 1031 aaKnown RBP19.03■□□□□ 0.64
SS18-212ENST00000579061 PI4KAP1Q8N8J0 262 aa19.03■□□□□ 0.64
SS18-212ENST00000579061 ZBTB38Q8NAP3 1195 aaPredicted RBP19.03■□□□□ 0.64
SS18-212ENST00000579061 ABCC4O15439 1325 aa19.02■□□□□ 0.64
SS18-212ENST00000579061 IRS4O14654 1257 aaPredicted RBP19.02■□□□□ 0.64
SS18-212ENST00000579061 TCERG1O14776 1098 aaKnown RBP19.02■□□□□ 0.64
SS18-212ENST00000579061 TOMM70O94826 608 aa19.02■□□□□ 0.64
SS18-212ENST00000579061 PCCAP05165 728 aaPredicted RBP19.02■□□□□ 0.64
SS18-212ENST00000579061 TMX4Q9H1E5 349 aaPredicted RBP19.02■□□□□ 0.64
SS18-212ENST00000579061 CWC25Q9NXE8 425 aaPredicted RBP19.02■□□□□ 0.64
SS18-212ENST00000579061 ATP6V0A2Q9Y487 856 aa19.02■□□□□ 0.64
SS18-212ENST00000579061 WDR90Q96KV7 1748 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 NEXNQ0ZGT2 675 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 FLIIQ13045 1269 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 GRAPQ13588 217 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 G2E3Q7L622 706 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 TMC4Q7Z404 712 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 GRAPLQ8TC17 118 aaPredicted RBP19.01■□□□□ 0.63
SS18-212ENST00000579061 TAF1P21675 1872 aa19.01■□□□□ 0.63
SS18-212ENST00000579061 IARSP41252 1262 aaKnown RBP19■□□□□ 0.63
SS18-212ENST00000579061 SP8Q8IXZ3 490 aa19■□□□□ 0.63
SS18-212ENST00000579061 ZNF428Q96B54 188 aa19■□□□□ 0.63
SS18-212ENST00000579061 RRAGCQ9HB90 399 aa19■□□□□ 0.63
SS18-212ENST00000579061 ZNF277Q9NRM2 450 aaPredicted RBP19■□□□□ 0.63
SS18-212ENST00000579061 VPS33BQ9H267 617 aa18.99■□□□□ 0.63
SS18-212ENST00000579061 CDHR2Q9BYE9 1310 aa18.99■□□□□ 0.63
SS18-212ENST00000579061 E9PSI1 815 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms