RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NMIQ13287 307 aaPredicted RBP27.36■■□□□ 1.97
VPS53-211ENST00000571805 NEXNQ0ZGT2 675 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 COPS6Q7L5N1 327 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 METTL22Q9BUU2 404 aaPredicted RBP27.35■■□□□ 1.97
VPS53-211ENST00000571805 SIL1Q9H173 461 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 RBM8AQ9Y5S9 174 aaKnown RBP27.35■■□□□ 1.97
VPS53-211ENST00000571805 TATP17735 454 aaPredicted RBP27.35■■□□□ 1.97
VPS53-211ENST00000571805 EPHA10Q5JZY3 1008 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 LRP10Q7Z4F1 713 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 KLHDC4Q8TBB5 520 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 ZSCAN31Q96LW9 406 aaPredicted RBP27.35■■□□□ 1.97
VPS53-211ENST00000571805 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.35■■□□□ 1.971e-6■■□□□ 14.2
VPS53-211ENST00000571805 CNPY2Q9Y2B0 182 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 MRC1P22897 1456 aa27.35■■□□□ 1.97
VPS53-211ENST00000571805 MEGF6O75095 1541 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 CREB3L3Q68CJ9 461 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 ZNF496Q96IT1 587 aaPredicted RBP27.34■■□□□ 1.97
VPS53-211ENST00000571805 TSPY26PQ9H489 355 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 COL18A1P39060 1754 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 F13A1P00488 732 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 CCDC83Q8IWF9 413 aa27.34■■□□□ 1.97
VPS53-211ENST00000571805 MYD88Q99836 296 aa27.33■■□□□ 1.97
VPS53-211ENST00000571805 SH2B1Q9NRF2 756 aaPredicted RBP27.33■■□□□ 1.97
VPS53-211ENST00000571805 ZKSCAN1P17029 563 aaPredicted RBP27.32■■□□□ 1.96
VPS53-211ENST00000571805 ST3GAL1Q11201 340 aa27.32■■□□□ 1.96
VPS53-211ENST00000571805 BOLA2Q9H3K6 86 aa27.32■■□□□ 1.96
VPS53-211ENST00000571805 NOL7Q9UMY1 257 aaKnown RBP27.32■■□□□ 1.96
VPS53-211ENST00000571805 GJB2P29033 226 aa27.31■■□□□ 1.96
VPS53-211ENST00000571805 IFNL2Q8IZJ0 200 aa27.31■■□□□ 1.96
VPS53-211ENST00000571805 RNF214Q8ND24 703 aa27.31■■□□□ 1.96
VPS53-211ENST00000571805 EIF2AK3Q9NZJ5 1116 aaKnown RBP27.31■■□□□ 1.96
VPS53-211ENST00000571805 USP16Q9Y5T5 823 aa27.31■■□□□ 1.96
VPS53-211ENST00000571805 ABCC6O95255 1503 aa27.31■■□□□ 1.96
VPS53-211ENST00000571805 A0A0D9SFI3 127 aa27.3■■□□□ 1.96
VPS53-211ENST00000571805 PHF14O94880 888 aa27.3■■□□□ 1.96
VPS53-211ENST00000571805 MSNP26038 577 aaKnown RBP27.3■■□□□ 1.96
VPS53-211ENST00000571805 ME3Q16798 604 aa27.3■■□□□ 1.96
VPS53-211ENST00000571805 ANKRD13DQ6ZTN6 518 aa27.3■■□□□ 1.96
VPS53-211ENST00000571805 SLC27A2O14975 620 aa27.29■■□□□ 1.96
VPS53-211ENST00000571805 DDX54Q8TDD1 881 aaKnown RBP27.29■■□□□ 1.96
VPS53-211ENST00000571805 MTMR6Q9Y217 621 aa27.29■■□□□ 1.96
VPS53-211ENST00000571805 SNRPA1P09661 255 aaKnown RBP27.29■■□□□ 1.96
VPS53-211ENST00000571805 COPRSQ9NQ92 184 aa27.29■■□□□ 1.96
VPS53-211ENST00000571805 MED23Q9ULK4 1368 aa27.28■■□□□ 1.96
VPS53-211ENST00000571805 RFX5P48382 616 aaPredicted RBP27.28■■□□□ 1.96
VPS53-211ENST00000571805 DDX17Q92841 729 aaKnown RBP27.28■■□□□ 1.96
VPS53-211ENST00000571805 FSD1Q9BTV5 496 aa27.28■■□□□ 1.96
VPS53-211ENST00000571805 ATP6V1DQ9Y5K8 247 aa27.28■■□□□ 1.96
VPS53-211ENST00000571805 COL9A3Q14050 684 aaPredicted RBP27.28■■□□□ 1.96
VPS53-211ENST00000571805 KCNJ4P48050 445 aa27.27■■□□□ 1.96
VPS53-211ENST00000571805 UBE2HP62256 183 aa27.27■■□□□ 1.96
VPS53-211ENST00000571805 TPCN1Q9ULQ1 816 aa27.27■■□□□ 1.96
VPS53-211ENST00000571805 CYP27B1O15528 508 aa27.27■■□□□ 1.96
VPS53-211ENST00000571805 DCAF5Q96JK2 942 aa27.27■■□□□ 1.96
VPS53-211ENST00000571805 JCADQ9P266 1359 aa27.26■■□□□ 1.96
VPS53-211ENST00000571805 DTNBO60941 627 aa27.26■■□□□ 1.95
VPS53-211ENST00000571805 CCDC183Q5T5S1 534 aa27.26■■□□□ 1.95
VPS53-211ENST00000571805 PSMA5P28066 241 aa27.25■■□□□ 1.95
VPS53-211ENST00000571805 PIP4K2AP48426 406 aaPredicted RBP27.25■■□□□ 1.95
VPS53-211ENST00000571805 PTPN12Q05209 780 aaKnown RBP27.25■■□□□ 1.95
VPS53-211ENST00000571805 NECAB1Q8N987 351 aa27.25■■□□□ 1.95
VPS53-211ENST00000571805 JARID2Q92833 1246 aaPredicted RBP27.25■■□□□ 1.95
VPS53-211ENST00000571805 PLEKHG2Q9H7P9 1386 aa27.25■■□□□ 1.95
VPS53-211ENST00000571805 OFD1O75665 1012 aa27.24■■□□□ 1.95
VPS53-211ENST00000571805 TTC5Q8N0Z6 440 aa27.24■■□□□ 1.95
VPS53-211ENST00000571805 AFDNP55196 1824 aaKnown RBP27.24■■□□□ 1.95
VPS53-211ENST00000571805 COL15A1P39059 1388 aa27.24■■□□□ 1.95
VPS53-211ENST00000571805 RABL6Q3YEC7 729 aaPredicted RBP27.24■■□□□ 1.95
VPS53-211ENST00000571805 ZNF500O60304 480 aaPredicted RBP27.23■■□□□ 1.95
VPS53-211ENST00000571805 ZNF589Q86UQ0 364 aaPredicted RBP27.23■■□□□ 1.95
VPS53-211ENST00000571805 FMNL2Q96PY5 1086 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 ALDH8A1Q9H2A2 487 aaPredicted RBP27.23■■□□□ 1.95
VPS53-211ENST00000571805 TAF6LQ9Y6J9 622 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 CSB-PGBD3P0DP91 1061 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 ATP5JP18859 108 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 CABLES1Q8TDN4 633 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 DBNLQ9UJU6 430 aaKnown RBP27.23■■□□□ 1.95
VPS53-211ENST00000571805 PKD1L3Q7Z443 1732 aa27.23■■□□□ 1.95
VPS53-211ENST00000571805 ATF3P18847 181 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 ZKSCAN5Q9Y2L8 839 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 ARFGEF2Q9Y6D5 1785 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 FIBPO43427 364 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 DNM1Q05193 864 aaKnown RBP27.22■■□□□ 1.95
VPS53-211ENST00000571805 TNNI3KQ59H18 835 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 RNF20Q5VTR2 975 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 EDC3Q96F86 508 aaKnown RBP27.22■■□□□ 1.95
VPS53-211ENST00000571805 FPGT-TNNI3KV9GXZ4 949 aa27.22■■□□□ 1.95
VPS53-211ENST00000571805 TFCP2Q12800 502 aa27.21■■□□□ 1.95
VPS53-211ENST00000571805 TSGA10IPQ3SY00 556 aa27.21■■□□□ 1.95
VPS53-211ENST00000571805 CCDC39Q9UFE4 941 aa27.21■■□□□ 1.95
VPS53-211ENST00000571805 LETM1O95202 739 aaPredicted RBP27.21■■□□□ 1.95
VPS53-211ENST00000571805 UBE3BQ7Z3V4 1068 aa27.21■■□□□ 1.95
VPS53-211ENST00000571805 FAM184AQ8NB25 1140 aa27.21■■□□□ 1.95
VPS53-211ENST00000571805 TAF5LO75529 589 aa27.2■■□□□ 1.95
VPS53-211ENST00000571805 RPS6KB1P23443 525 aa27.2■■□□□ 1.95
VPS53-211ENST00000571805 CHRNA2Q15822 529 aa27.2■■□□□ 1.95
VPS53-211ENST00000571805 BLOC1S2Q6QNY1 142 aa27.2■■□□□ 1.95
VPS53-211ENST00000571805 GLI3P10071 1580 aa27.2■■□□□ 1.94
VPS53-211ENST00000571805 MCM5P33992 734 aa27.19■■□□□ 1.94
VPS53-211ENST00000571805 CASP7P55210 303 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms