RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PIP4K2AP48426 406 aaPredicted RBP26.35■■□□□ 1.81
VPS53-210ENST00000571456 LBX1P52954 281 aa26.35■■□□□ 1.81
VPS53-210ENST00000571456 TBC1D2BQ9UPU7 963 aa26.35■■□□□ 1.81
VPS53-210ENST00000571456 MAP3K15Q6ZN16 1313 aa26.35■■□□□ 1.81
VPS53-210ENST00000571456 CAMTA2O94983 1202 aa26.34■■□□□ 1.81
VPS53-210ENST00000571456 ALDH1L2Q3SY69 923 aa26.34■■□□□ 1.81
VPS53-210ENST00000571456 DDX58O95786 925 aaKnown RBP26.33■■□□□ 1.81
VPS53-210ENST00000571456 POTEIP0CG38 1075 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 POTEJP0CG39 1038 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 VEGFBP49765 207 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 NFIXQ14938 502 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 PROSER3Q2NL68 480 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 ERFEQ4G0M1 354 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 COPS6Q7L5N1 327 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 C2CD5Q86YS7 1000 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 WBP1LQ9NX94 342 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 FER1L6Q2WGJ9 1857 aa26.33■■□□□ 1.81
VPS53-210ENST00000571456 NUP98P52948 1817 aa26.32■■□□□ 1.8
VPS53-210ENST00000571456 H0YIN7 160 aa26.31■■□□□ 1.8
VPS53-210ENST00000571456 SLC4A2P04920 1241 aa26.31■■□□□ 1.8
VPS53-210ENST00000571456 HSP90AB3PQ58FF7 597 aa26.31■■□□□ 1.8
VPS53-210ENST00000571456 XAGE3Q8WTP9 111 aa26.31■■□□□ 1.8
VPS53-210ENST00000571456 PASKQ96RG2 1323 aa26.31■■□□□ 1.8
VPS53-210ENST00000571456 ANXA1P04083 346 aa26.3■■□□□ 1.8
VPS53-210ENST00000571456 PLBD2Q8NHP8 589 aa26.3■■□□□ 1.8
VPS53-210ENST00000571456 SERPINB2P05120 415 aa26.29■■□□□ 1.8
VPS53-210ENST00000571456 GIGYF2Q6Y7W6 1299 aaKnown RBP26.29■■□□□ 1.8
VPS53-210ENST00000571456 TTLL7Q6ZT98 887 aa26.29■■□□□ 1.8
VPS53-210ENST00000571456 ANKRD13DQ6ZTN6 518 aa26.29■■□□□ 1.8
VPS53-210ENST00000571456 BCL2L12Q9HB09 334 aa26.29■■□□□ 1.8
VPS53-210ENST00000571456 MLLT1Q03111 559 aaPredicted RBP26.28■■□□□ 1.8
VPS53-210ENST00000571456 TMEM88BA6NKF7 163 aa26.27■■□□□ 1.8
VPS53-210ENST00000571456 AIMP1Q12904 312 aaKnown RBP26.27■■□□□ 1.8
VPS53-210ENST00000571456 SCN4AP35499 1836 aa26.26■■□□□ 1.79
VPS53-210ENST00000571456 ANKRD36CQ5JPF3 1778 aa26.26■■□□□ 1.79
VPS53-210ENST00000571456 DDNO94850 711 aaPredicted RBP26.26■■□□□ 1.79
VPS53-210ENST00000571456 BRPF1P55201 1214 aaPredicted RBP26.26■■□□□ 1.79
VPS53-210ENST00000571456 LDHDQ86WU2 507 aa26.26■■□□□ 1.79
VPS53-210ENST00000571456 CARMIL3Q8ND23 1372 aa26.25■■□□□ 1.79
VPS53-210ENST00000571456 HSPA8P11142 646 aaKnown RBP26.25■■□□□ 1.79
VPS53-210ENST00000571456 FLIIQ13045 1269 aa26.25■■□□□ 1.79
VPS53-210ENST00000571456 SETDB2Q96T68 719 aa26.25■■□□□ 1.79
VPS53-210ENST00000571456 PHAXQ9H814 394 aaKnown RBP26.25■■□□□ 1.79
VPS53-210ENST00000571456 C21orf2O43822 256 aa26.24■■□□□ 1.79
VPS53-210ENST00000571456 ZBTB3Q9H5J0 574 aa26.24■■□□□ 1.79
VPS53-210ENST00000571456 ARFGEF2Q9Y6D5 1785 aa26.24■■□□□ 1.79
VPS53-210ENST00000571456 PTPRCP08575 1304 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 IQCA1LA6NCM1 817 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 PARP10Q53GL7 1025 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 KSR2Q6VAB6 950 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 RIC3Q7Z5B4 369 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 ANKRD31Q8N7Z5 1873 aa26.23■■□□□ 1.79
VPS53-210ENST00000571456 LTBP3Q9NS15 1303 aa26.22■■□□□ 1.79
VPS53-210ENST00000571456 RGS19P49795 217 aa26.22■■□□□ 1.79
VPS53-210ENST00000571456 SSH1Q8WYL5 1049 aa26.22■■□□□ 1.79
VPS53-210ENST00000571456 ZNF622Q969S3 477 aaKnown RBP eCLIP26.22■■□□□ 1.791e-8■■■□□ 18.7
VPS53-210ENST00000571456 ZNF219Q9P2Y4 722 aaPredicted RBP26.22■■□□□ 1.79
VPS53-210ENST00000571456 IBTKQ9P2D0 1353 aaPredicted RBP26.21■■□□□ 1.79
VPS53-210ENST00000571456 FKBP5Q13451 457 aaPredicted RBP26.21■■□□□ 1.79
VPS53-210ENST00000571456 TCIRG1Q13488 830 aa26.21■■□□□ 1.79
VPS53-210ENST00000571456 HLFQ16534 295 aa26.21■■□□□ 1.79
VPS53-210ENST00000571456 TBC1D9BQ66K14 1250 aa26.21■■□□□ 1.79
VPS53-210ENST00000571456 MRPL50Q8N5N7 158 aaKnown RBP26.21■■□□□ 1.79
VPS53-210ENST00000571456 YTHDC1Q96MU7 727 aaKnown RBP26.21■■□□□ 1.79
VPS53-210ENST00000571456 TAOK3Q9H2K8 898 aa26.21■■□□□ 1.79
VPS53-210ENST00000571456 SMC4Q9NTJ3 1288 aa26.21■■□□□ 1.79
VPS53-210ENST00000571456 NIP7Q9Y221 180 aaKnown RBP eCLIP26.21■■□□□ 1.79
VPS53-210ENST00000571456 RNF123Q5XPI4 1314 aa26.2■■□□□ 1.79
VPS53-210ENST00000571456 TCERG1O14776 1098 aaKnown RBP26.2■■□□□ 1.78
VPS53-210ENST00000571456 ITGBL1O95965 494 aaPredicted RBP26.2■■□□□ 1.78
VPS53-210ENST00000571456 RARSP54136 660 aaKnown RBP26.2■■□□□ 1.78
VPS53-210ENST00000571456 ZNF34Q8IZ26 560 aa26.2■■□□□ 1.78
VPS53-210ENST00000571456 TAF1DQ9H5J8 278 aaPredicted RBP26.2■■□□□ 1.78
VPS53-210ENST00000571456 PDZRN3Q9UPQ7 1066 aa26.2■■□□□ 1.78
VPS53-210ENST00000571456 KIF16BQ96L93 1317 aa26.19■■□□□ 1.78
VPS53-210ENST00000571456 CCDC85CA6NKD9 419 aa26.19■■□□□ 1.78
VPS53-210ENST00000571456 MAP2K1Q02750 393 aaPredicted RBP26.19■■□□□ 1.78
VPS53-210ENST00000571456 TRIM28Q13263 835 aaKnown RBP26.19■■□□□ 1.78
VPS53-210ENST00000571456 NYXQ9GZU5 481 aa26.19■■□□□ 1.78
VPS53-210ENST00000571456 PDE4DIPQ5VU43 2346 aa26.19■■□□□ 1.78
VPS53-210ENST00000571456 COL11A2P13942 1736 aaPredicted RBP26.18■■□□□ 1.78
VPS53-210ENST00000571456 NEXNQ0ZGT2 675 aa26.18■■□□□ 1.78
VPS53-210ENST00000571456 L3MBTL3Q96JM7 780 aaPredicted RBP26.18■■□□□ 1.78
VPS53-210ENST00000571456 PI4KAP2A4QPH2 592 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 RASSF10A6NK89 507 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 DEFB115Q30KQ5 88 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 TPTE2Q6XPS3 522 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 G2E3Q7L622 706 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 PPP1R42Q7Z4L9 355 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 PI4KAP1Q8N8J0 262 aa26.17■■□□□ 1.78
VPS53-210ENST00000571456 METTL22Q9BUU2 404 aaPredicted RBP26.17■■□□□ 1.78
VPS53-210ENST00000571456 PDE6BP35913 854 aa26.16■■□□□ 1.78
VPS53-210ENST00000571456 BICDL1Q6ZP65 573 aa26.16■■□□□ 1.78
VPS53-210ENST00000571456 MAP3K2Q9Y2U5 619 aa26.16■■□□□ 1.78
VPS53-210ENST00000571456 CACNA1SQ13698 1873 aa26.16■■□□□ 1.78
VPS53-210ENST00000571456 NBPF5PQ86XG9 351 aaPredicted RBP26.15■■□□□ 1.78
VPS53-210ENST00000571456 DNAAF4Q8WXU2 420 aa26.15■■□□□ 1.78
VPS53-210ENST00000571456 ARHGAP45Q92619 1136 aa26.15■■□□□ 1.78
VPS53-210ENST00000571456 ISCA1Q9BUE6 129 aa26.15■■□□□ 1.78
VPS53-210ENST00000571456 BRIP1Q9BX63 1249 aa26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms