RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	NEMF	O60524	1076 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	PLCD3	Q8N3E9	789 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	ZNF397	Q8NF99	534 aa	Predicted RBP	13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	ZNF75D	P51815	510 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	NAA30	Q147X3	362 aa	Predicted RBP	13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	CREB3L3	Q68CJ9	461 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	CWC15	Q9P013	229 aa	Known RBP	13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	AK9	Q5TCS8	1911 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	MYOM1	P52179	1685 aa		13.33	□□□□□ -0.27
CLN3-238	ENST00000569430	CCDC171	Q6TFL3	1326 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	RAD50	Q92878	1312 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	SYT10	Q6XYQ8	523 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	TTC6	Q86TZ1	520 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	KIDINS220	Q9ULH0	1771 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	TPM1	P09493	284 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	PDIA4	P13667	645 aa	Known RBP	13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	NMI	Q13287	307 aa	Predicted RBP	13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	VPS53	Q5VIR6	699 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	CHPF2	Q9P2E5	772 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	MPRIP	Q6WCQ1	1025 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	MTMR6	Q9Y217	621 aa		13.33	□□□□□ -0.28
CLN3-238	ENST00000569430	ZSCAN25	Q6NSZ9	544 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	LEKR1	Q6ZMV7	388 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	AK7	Q96M32	723 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	NEK1	Q96PY6	1258 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	ZNF215	Q9UL58	517 aa	Predicted RBP	13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	KIF1B	O60333	1816 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	CCP110	O43303	1012 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	LMOD1	P29536	600 aa	Predicted RBP	13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	ARHGAP29	Q52LW3	1261 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	TTC5	Q8N0Z6	440 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	MROH1	Q8NDA8	1641 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	ACE	P12821	1306 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	CTAGE5	O15320	804 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	PSME1	Q06323	249 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	ME3	Q16798	604 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	FAM227B	Q96M60	508 aa		13.32	□□□□□ -0.28
CLN3-238	ENST00000569430	INO80	Q9ULG1	1556 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	MAP3K2	Q9Y2U5	619 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	LAMC1	P11047	1609 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430		A0A087WWV3	80 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	PTH1R	Q03431	593 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	NCOA3	Q9Y6Q9	1424 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	SLC3A2	P08195	630 aa	Known RBP	13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	GSDMD	P57764	484 aa		13.31	□□□□□ -0.28
CLN3-238	ENST00000569430	ADCK5	Q3MIX3	580 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	TSR1	Q2NL82	804 aa	Known RBP	13.3	□□□□□ -0.28
CLN3-238	ENST00000569430		Q6ZUG5	572 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	CHST3	Q7LGC8	479 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	LEO1	Q8WVC0	666 aa	Predicted RBP	13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	HOOK1	Q9UJC3	728 aa	Known RBP	13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	MYOM2	P54296	1465 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	NR1I2	O75469	434 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	LARGE1	O95461	756 aa		13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	TOP1	P11387	765 aa	Known RBP	13.3	□□□□□ -0.28
CLN3-238	ENST00000569430	JAK2	O60674	1132 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	ZNF853	P0CG23	659 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	DDX46	Q7L014	1031 aa	Known RBP	13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	CCDC102A	Q96A19	550 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	IFNK	Q9P0W0	207 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	CAVIN2	O95810	425 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	LMAN1	P49257	510 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	GNG11	P61952	73 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	USP44	Q9H0E7	712 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	TTC21B	Q7Z4L5	1316 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	PIK3R4	Q99570	1358 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	CWF19L2	Q2TBE0	894 aa	Known RBP	13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	NOM1	Q5C9Z4	860 aa	Known RBP	13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	UTP14C	Q5TAP6	766 aa	Known RBP	13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	CPLX3	Q8WVH0	158 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	C8orf76	Q96K31	380 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	ZFYVE9	O95405	1425 aa		13.29	□□□□□ -0.28
CLN3-238	ENST00000569430	DHX16	O60231	1041 aa	Known RBP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	CACTIN	Q8WUQ7	758 aa	Known RBP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	OSBPL3	Q9H4L5	887 aa		13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	HAND2	P61296	217 aa		13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	AKAP17A	Q02040	695 aa	Known RBP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	SAFB	Q15424	915 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	TULP4	Q9NRJ4	1543 aa		13.28	□□□□□ -0.28
CLN3-238	ENST00000569430	ABCA9	Q8IUA7	1624 aa		13.27	□□□□□ -0.28
CLN3-238	ENST00000569430		A0A1B0GVL5	298 aa		13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	EYA1	Q99502	592 aa		13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	CLSTN2	Q9H4D0	955 aa		13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	RGS12	O14924	1447 aa		13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.27	□□□□□ -0.28
CLN3-238	ENST00000569430	ERCC6L	Q2NKX8	1250 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	NLRP2	Q9NX02	1062 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	TPCN1	Q9ULQ1	816 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	MRVI1	Q9Y6F6	885 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	NDUFB9	Q9Y6M9	179 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	ABCC3	O15438	1527 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	CBFA2T2	O43439	604 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	GABPB1	Q06547	395 aa	Predicted RBP	13.27	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms