RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 VAMP4O75379 141 aa16.63■□□□□ 0.25
CLK3-224ENST00000568605 NTSR2O95665 410 aa16.63■□□□□ 0.25
CLK3-224ENST00000568605 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
CLK3-224ENST00000568605 KCNA3P22001 575 aa16.63■□□□□ 0.25
CLK3-224ENST00000568605 CCDC24Q8N4L8 307 aa16.63■□□□□ 0.25
CLK3-224ENST00000568605 HNRNPUQ00839 825 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLK3-224ENST00000568605 SLFN5Q08AF3 891 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 NEXNQ0ZGT2 675 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 SUSD4Q5VX71 490 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 NLRP10Q86W26 655 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 NUTM1Q86Y26 1132 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 TTLL6Q8N841 843 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 CNKSR1Q969H4 720 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.253e-6■□□□□ 10
CLK3-224ENST00000568605 MASTLQ96GX5 879 aa16.62■□□□□ 0.25
CLK3-224ENST00000568605 TCERG1O14776 1098 aaKnown RBP16.61■□□□□ 0.25
CLK3-224ENST00000568605 FLIIQ13045 1269 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 FKBP5Q13451 457 aaPredicted RBP16.61■□□□□ 0.25
CLK3-224ENST00000568605 ERFEQ4G0M1 354 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 STYK1Q6J9G0 422 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 ZNF428Q96B54 188 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 SH3TC1Q8TE82 1336 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 LRRC37AA6NMS7 1700 aa16.61■□□□□ 0.25
CLK3-224ENST00000568605 SRGNP10124 158 aa16.6■□□□□ 0.25
CLK3-224ENST00000568605 NPR1P16066 1061 aa16.6■□□□□ 0.25
CLK3-224ENST00000568605 KSR2Q6VAB6 950 aa16.6■□□□□ 0.25
CLK3-224ENST00000568605 ISCA1Q9BUE6 129 aa16.6■□□□□ 0.25
CLK3-224ENST00000568605 TRMT112Q9UI30 125 aaKnown RBP16.6■□□□□ 0.25
CLK3-224ENST00000568605 CT47B1P0C2W7 299 aaPredicted RBP16.59■□□□□ 0.25
CLK3-224ENST00000568605 HSP90B1P14625 803 aaKnown RBP16.59■□□□□ 0.25
CLK3-224ENST00000568605 YY1P25490 414 aa16.59■□□□□ 0.25
CLK3-224ENST00000568605 RPGRQ92834 1020 aaKnown RBP16.59■□□□□ 0.25
CLK3-224ENST00000568605 MYD88Q99836 296 aa16.59■□□□□ 0.25
CLK3-224ENST00000568605 METTL22Q9BUU2 404 aaPredicted RBP16.59■□□□□ 0.25
CLK3-224ENST00000568605 MAP3K2Q9Y2U5 619 aa16.59■□□□□ 0.25
CLK3-224ENST00000568605 ADCY9O60503 1353 aa16.59■□□□□ 0.25
CLK3-224ENST00000568605 UTRNP46939 3433 aa16.58■□□□□ 0.25
CLK3-224ENST00000568605 KLRG2A4D1S0 409 aaPredicted RBP16.58■□□□□ 0.24
CLK3-224ENST00000568605 PI4KAP2A4QPH2 592 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 ATP5J2-PTCD1G3V325 749 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 TRIM28Q13263 835 aaKnown RBP16.58■□□□□ 0.24
CLK3-224ENST00000568605 SOGA3Q5TF21 947 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 PI4KAP1Q8N8J0 262 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 CCDC191Q8NCU4 936 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 NLRP3Q96P20 1036 aa16.58■□□□□ 0.24
CLK3-224ENST00000568605 ALDH1B1P30837 517 aa16.57■□□□□ 0.24
CLK3-224ENST00000568605 CRY2Q49AN0 593 aa16.57■□□□□ 0.24
CLK3-224ENST00000568605 CDCA7LQ96GN5 454 aa16.57■□□□□ 0.24
CLK3-224ENST00000568605 CWC25Q9NXE8 425 aaPredicted RBP16.57■□□□□ 0.24
CLK3-224ENST00000568605 ZBED9Q6R2W3 1325 aa16.56■□□□□ 0.24
CLK3-224ENST00000568605 SLC10A5Q5PT55 438 aa16.56■□□□□ 0.24
CLK3-224ENST00000568605 PRPF40BQ6NWY9 871 aaKnown RBP16.56■□□□□ 0.24
CLK3-224ENST00000568605 ARHGAP27Q6ZUM4 889 aa16.56■□□□□ 0.24
CLK3-224ENST00000568605 G2E3Q7L622 706 aa16.56■□□□□ 0.24
CLK3-224ENST00000568605 TRMT2AQ8IZ69 625 aaKnown RBP16.55■□□□□ 0.24
CLK3-224ENST00000568605 DNAAF4Q8WXU2 420 aa16.55■□□□□ 0.24
CLK3-224ENST00000568605 RBM17Q96I25 401 aaKnown RBP16.55■□□□□ 0.24
CLK3-224ENST00000568605 ALDH1L2Q3SY69 923 aa16.54■□□□□ 0.24
CLK3-224ENST00000568605 ZBTB38Q8NAP3 1195 aaPredicted RBP16.54■□□□□ 0.24
CLK3-224ENST00000568605 PTPRCP08575 1304 aa16.53■□□□□ 0.24
CLK3-224ENST00000568605 A0A1B0GUL6 1792 aa16.53■□□□□ 0.24
CLK3-224ENST00000568605 CDHR2Q9BYE9 1310 aa16.52■□□□□ 0.24
CLK3-224ENST00000568605 PCCAP05165 728 aaPredicted RBP16.52■□□□□ 0.24
CLK3-224ENST00000568605 HOXA10P31260 410 aaPredicted RBP16.52■□□□□ 0.24
CLK3-224ENST00000568605 CCDC93Q567U6 631 aa16.52■□□□□ 0.24
CLK3-224ENST00000568605 FAM89AQ96GI7 184 aa16.52■□□□□ 0.24
CLK3-224ENST00000568605 CRAMP1Q96RY5 1269 aa16.52■□□□□ 0.24
CLK3-224ENST00000568605 TMX4Q9H1E5 349 aaPredicted RBP16.52■□□□□ 0.24
CLK3-224ENST00000568605 SMC4Q9NTJ3 1288 aa16.52■□□□□ 0.24
CLK3-224ENST00000568605 NEURL1BA8MQ27 555 aa16.51■□□□□ 0.23
CLK3-224ENST00000568605 IRS4O14654 1257 aaPredicted RBP16.51■□□□□ 0.23
CLK3-224ENST00000568605 C21orf2O43822 256 aa16.51■□□□□ 0.23
CLK3-224ENST00000568605 HCLS1P14317 486 aaPredicted RBP16.51■□□□□ 0.23
CLK3-224ENST00000568605 DDX46Q7L014 1031 aaKnown RBP16.51■□□□□ 0.23
CLK3-224ENST00000568605 LINS1Q8NG48 757 aa16.51■□□□□ 0.23
CLK3-224ENST00000568605 IGKV5-2P06315 115 aa16.5■□□□□ 0.23
CLK3-224ENST00000568605 CWF19L2Q2TBE0 894 aaKnown RBP16.5■□□□□ 0.23
CLK3-224ENST00000568605 RTL5Q5HYW3 569 aaPredicted RBP16.5■□□□□ 0.23
CLK3-224ENST00000568605 CC2D2BQ6DHV5 1058 aa16.5■□□□□ 0.23
CLK3-224ENST00000568605 TAOK3Q9H2K8 898 aa16.5■□□□□ 0.23
CLK3-224ENST00000568605 ZNF219Q9P2Y4 722 aaPredicted RBP16.5■□□□□ 0.23
CLK3-224ENST00000568605 LTBP1Q14766 1721 aa16.5■□□□□ 0.23
CLK3-224ENST00000568605 ABCC4O15439 1325 aa16.49■□□□□ 0.23
CLK3-224ENST00000568605 KIF16BQ96L93 1317 aa16.49■□□□□ 0.23
CLK3-224ENST00000568605 LTBP3Q9NS15 1303 aa16.49■□□□□ 0.23
CLK3-224ENST00000568605 ZC3H4Q9UPT8 1303 aaKnown RBP16.49■□□□□ 0.23
CLK3-224ENST00000568605 PPEF1O14829 653 aaPredicted RBP16.49■□□□□ 0.23
CLK3-224ENST00000568605 GRIPAP1Q4V328 841 aa16.49■□□□□ 0.23
CLK3-224ENST00000568605 MRPL50Q8N5N7 158 aaKnown RBP16.49■□□□□ 0.23
CLK3-224ENST00000568605 SSH1Q8WYL5 1049 aa16.49■□□□□ 0.23
CLK3-224ENST00000568605 PDE8AO60658 829 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 LMNB1P20700 586 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 C3orf67Q6ZVT6 689 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 TMC4Q7Z404 712 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 RTKN2Q8IZC4 609 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 SYNE4Q8N205 404 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 BCL2L13Q9BXK5 485 aa16.48■□□□□ 0.23
CLK3-224ENST00000568605 F6X3S4 739 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 RASSF7Q02833 373 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 GCKRQ14397 625 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms