RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 PARP10Q53GL7 1025 aa20.64■□□□□ 0.89
CLK3-211ENST00000563297 CC2D2BQ6DHV5 1058 aa20.64■□□□□ 0.89
CLK3-211ENST00000563297 RPGRQ92834 1020 aaKnown RBP20.64■□□□□ 0.89
CLK3-211ENST00000563297 PSMD1Q99460 953 aa20.64■□□□□ 0.89
CLK3-211ENST00000563297 RIC1Q4ADV7 1423 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 SNED1Q8TER0 1413 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 ZNF541Q9H0D2 1346 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 IQCA1LA6NCM1 817 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 FZD9O00144 591 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 C3orf67Q6ZVT6 689 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 NECTIN2Q92692 538 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 RUNDC1Q96C34 613 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 CRAMP1Q96RY5 1269 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 TAF1DQ9H5J8 278 aaPredicted RBP20.63■□□□□ 0.89
CLK3-211ENST00000563297 TRIM35Q9UPQ4 493 aa20.63■□□□□ 0.89
CLK3-211ENST00000563297 PCNTO95613 3336 aa20.62■□□□□ 0.89
CLK3-211ENST00000563297 SLC10A5Q5PT55 438 aa20.62■□□□□ 0.89
CLK3-211ENST00000563297 COPS6Q7L5N1 327 aa20.62■□□□□ 0.89
CLK3-211ENST00000563297 RBM17Q96I25 401 aaKnown RBP20.62■□□□□ 0.89
CLK3-211ENST00000563297 ADAMTS8Q9UP79 889 aa20.62■□□□□ 0.89
CLK3-211ENST00000563297 SCN4AP35499 1836 aa20.62■□□□□ 0.89
CLK3-211ENST00000563297 KRT24Q2M2I5 525 aa20.61■□□□□ 0.89
CLK3-211ENST00000563297 NLRP3Q96P20 1036 aa20.61■□□□□ 0.89
CLK3-211ENST00000563297 UTP14AQ9BVJ6 771 aaKnown RBP20.61■□□□□ 0.89
CLK3-211ENST00000563297 AIMP1Q12904 312 aaKnown RBP20.6■□□□□ 0.89
CLK3-211ENST00000563297 WDR43Q15061 677 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLK3-211ENST00000563297 XAGE3Q8WTP9 111 aa20.6■□□□□ 0.89
CLK3-211ENST00000563297 LAS1LQ9Y4W2 734 aaKnown RBP20.6■□□□□ 0.89
CLK3-211ENST00000563297 TCERG1O14776 1098 aaKnown RBP20.59■□□□□ 0.89
CLK3-211ENST00000563297 GRIPAP1Q4V328 841 aa20.59■□□□□ 0.89
CLK3-211ENST00000563297 SLC51AQ86UW1 340 aa20.59■□□□□ 0.89
CLK3-211ENST00000563297 LDHDQ86WU2 507 aa20.59■□□□□ 0.89
CLK3-211ENST00000563297 JDP2Q8WYK2 163 aa20.59■□□□□ 0.89
CLK3-211ENST00000563297 DDX21Q9NR30 783 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLK3-211ENST00000563297 HACL1Q9UJ83 578 aa20.59■□□□□ 0.89
CLK3-211ENST00000563297 PPEF1O14829 653 aaPredicted RBP20.57■□□□□ 0.88
CLK3-211ENST00000563297 TCIRG1Q13488 830 aa20.57■□□□□ 0.88
CLK3-211ENST00000563297 HSP90AB3PQ58FF7 597 aa20.57■□□□□ 0.88
CLK3-211ENST00000563297 NLRP10Q86W26 655 aa20.57■□□□□ 0.88
CLK3-211ENST00000563297 GPC2Q8N158 579 aa20.57■□□□□ 0.88
CLK3-211ENST00000563297 CREBZFQ9NS37 354 aa20.57■□□□□ 0.88
CLK3-211ENST00000563297 EPHX2P34913 555 aa20.56■□□□□ 0.88
CLK3-211ENST00000563297 EAPPQ56P03 285 aaPredicted RBP20.56■□□□□ 0.88
CLK3-211ENST00000563297 PRKRIP1Q9H875 184 aaPredicted RBP20.56■□□□□ 0.88
CLK3-211ENST00000563297 RNF123Q5XPI4 1314 aa20.55■□□□□ 0.88
CLK3-211ENST00000563297 PASKQ96RG2 1323 aa20.55■□□□□ 0.88
CLK3-211ENST00000563297 COL4A5P29400 1685 aa20.55■□□□□ 0.88
CLK3-211ENST00000563297 ITGBL1O95965 494 aaPredicted RBP20.55■□□□□ 0.88
CLK3-211ENST00000563297 CHPF2Q9P2E5 772 aa20.55■□□□□ 0.88
CLK3-211ENST00000563297 HCLS1P14317 486 aaPredicted RBP20.54■□□□□ 0.88
CLK3-211ENST00000563297 EIF6P56537 245 aaKnown RBP20.54■□□□□ 0.88
CLK3-211ENST00000563297 COL13A1Q5TAT6 717 aaPredicted RBP20.54■□□□□ 0.88
CLK3-211ENST00000563297 LARGE2Q8N3Y3 721 aa20.54■□□□□ 0.88
CLK3-211ENST00000563297 CLEC11AQ9Y240 323 aa20.54■□□□□ 0.88
CLK3-211ENST00000563297 ATP6V0A2Q9Y487 856 aa20.54■□□□□ 0.88
CLK3-211ENST00000563297 PNMA8AQ86V59 439 aaPredicted RBP20.53■□□□□ 0.88
CLK3-211ENST00000563297 CFAP44Q96MT7 982 aa20.53■□□□□ 0.88
CLK3-211ENST00000563297 TRMT112Q9UI30 125 aaKnown RBP20.53■□□□□ 0.88
CLK3-211ENST00000563297 GJA3Q9Y6H8 435 aa20.53■□□□□ 0.88
CLK3-211ENST00000563297 ABCC4O15439 1325 aa20.53■□□□□ 0.88
CLK3-211ENST00000563297 ANKRD36CQ5JPF3 1778 aa20.52■□□□□ 0.88
CLK3-211ENST00000563297 BBOX1O75936 387 aa20.52■□□□□ 0.88
CLK3-211ENST00000563297 HOXB7P09629 217 aa20.52■□□□□ 0.88
CLK3-211ENST00000563297 HDGFL1Q5TGJ6 251 aa20.52■□□□□ 0.88
CLK3-211ENST00000563297 TMX4Q9H1E5 349 aaPredicted RBP20.52■□□□□ 0.88
CLK3-211ENST00000563297 MKRN1Q9UHC7 482 aaKnown RBP20.52■□□□□ 0.88
CLK3-211ENST00000563297 HSPA1AP0DMV8 641 aaKnown RBP20.51■□□□□ 0.87
CLK3-211ENST00000563297 HSPA1BP0DMV9 641 aaKnown RBP20.51■□□□□ 0.87
CLK3-211ENST00000563297 ANKRD13DQ6ZTN6 518 aa20.51■□□□□ 0.87
CLK3-211ENST00000563297 SP8Q8IXZ3 490 aa20.51■□□□□ 0.87
CLK3-211ENST00000563297 PLBD2Q8NHP8 589 aa20.51■□□□□ 0.87
CLK3-211ENST00000563297 SH3TC1Q8TE82 1336 aa20.51■□□□□ 0.87
CLK3-211ENST00000563297 CNTROBQ8N137 903 aa20.5■□□□□ 0.87
CLK3-211ENST00000563297 VPS33BQ9H267 617 aa20.5■□□□□ 0.87
CLK3-211ENST00000563297 DBF4Q9UBU7 674 aaPredicted RBP20.5■□□□□ 0.87
CLK3-211ENST00000563297 LAMB2P55268 1798 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 ADAMTSL1Q8N6G6 1762 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 PPIP5K2O43314 1243 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 ZNF853P0CG23 659 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 AOC3Q16853 763 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 DUSP27Q5VZP5 1158 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 MAP1SQ66K74 1059 aaPredicted RBP20.49■□□□□ 0.87
CLK3-211ENST00000563297 DDX46Q7L014 1031 aaKnown RBP20.49■□□□□ 0.87
CLK3-211ENST00000563297 NIM1KQ8IY84 436 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 ZNF428Q96B54 188 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 RTFDC1Q9BY42 306 aaPredicted RBP20.49■□□□□ 0.87
CLK3-211ENST00000563297 MBIPQ9NS73 344 aa20.49■□□□□ 0.87
CLK3-211ENST00000563297 TMEM88BA6NKF7 163 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 APAF1O14727 1248 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 EPS15P42566 896 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 SCNN1DP51172 638 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 ISCA1Q9BUE6 129 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 HYPKQ9NX55 129 aa20.48■□□□□ 0.87
CLK3-211ENST00000563297 TAF1P21675 1872 aa20.47■□□□□ 0.87
CLK3-211ENST00000563297 GRAPQ13588 217 aa20.47■□□□□ 0.87
CLK3-211ENST00000563297 MPNDQ8N594 471 aa20.47■□□□□ 0.87
CLK3-211ENST00000563297 SUPT20HQ8NEM7 779 aa20.47■□□□□ 0.87
CLK3-211ENST00000563297 GRAPLQ8TC17 118 aaPredicted RBP20.47■□□□□ 0.87
CLK3-211ENST00000563297 CNTNAP1P78357 1384 aa20.46■□□□□ 0.87
CLK3-211ENST00000563297 ATP5J2-PTCD1G3V325 749 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms