RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RPGRQ92834 1020 aaKnown RBP21.85■■□□□ 1.09
CLK3-210ENST00000563112 RRAGCQ9HB90 399 aa21.85■■□□□ 1.09
CLK3-210ENST00000563112 RIC1Q4ADV7 1423 aa21.84■■□□□ 1.09
CLK3-210ENST00000563112 GLTPD2A6NH11 291 aa21.84■■□□□ 1.09
CLK3-210ENST00000563112 DPY19L2Q6NUT2 758 aa21.84■■□□□ 1.09
CLK3-210ENST00000563112 HYPKQ9NX55 129 aa21.84■■□□□ 1.09
CLK3-210ENST00000563112 HSPA6P17066 643 aa21.83■■□□□ 1.09
CLK3-210ENST00000563112 TCIRG1Q13488 830 aa21.83■■□□□ 1.09
CLK3-210ENST00000563112 RTKN2Q8IZC4 609 aa21.83■■□□□ 1.09
CLK3-210ENST00000563112 NLRP3Q96P20 1036 aa21.83■■□□□ 1.09
CLK3-210ENST00000563112 CHMP4AQ9BY43 222 aa21.83■■□□□ 1.09
CLK3-210ENST00000563112 RNF123Q5XPI4 1314 aa21.82■■□□□ 1.08
CLK3-210ENST00000563112 PLBD2Q8NHP8 589 aa21.82■■□□□ 1.08
CLK3-210ENST00000563112 RBM17Q96I25 401 aaKnown RBP21.82■■□□□ 1.08
CLK3-210ENST00000563112 TIAM2Q8IVF5 1701 aa21.81■■□□□ 1.08
CLK3-210ENST00000563112 DICER1Q9UPY3 1922 aaKnown RBP21.81■■□□□ 1.08
CLK3-210ENST00000563112 HOXA10P31260 410 aaPredicted RBP21.81■■□□□ 1.08
CLK3-210ENST00000563112 SLC10A5Q5PT55 438 aa21.81■■□□□ 1.08
CLK3-210ENST00000563112 ANKRD13DQ6ZTN6 518 aa21.81■■□□□ 1.08
CLK3-210ENST00000563112 RBM46Q8TBY0 533 aaKnown RBP21.81■■□□□ 1.08
CLK3-210ENST00000563112 TNRC6CQ9HCJ0 1690 aaKnown RBP21.81■■□□□ 1.08
CLK3-210ENST00000563112 ELL2O00472 640 aaPredicted RBP21.8■■□□□ 1.08
CLK3-210ENST00000563112 FKBP4Q02790 459 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLK3-210ENST00000563112 CCDC27Q2M243 656 aa21.8■■□□□ 1.08
CLK3-210ENST00000563112 CC2D2BQ6DHV5 1058 aa21.8■■□□□ 1.08
CLK3-210ENST00000563112 NLRP10Q86W26 655 aa21.8■■□□□ 1.08
CLK3-210ENST00000563112 VEGFAP15692 232 aaPredicted RBP21.79■■□□□ 1.08
CLK3-210ENST00000563112 CRAMP1Q96RY5 1269 aa21.79■■□□□ 1.08
CLK3-210ENST00000563112 TRMT112Q9UI30 125 aaKnown RBP21.79■■□□□ 1.08
CLK3-210ENST00000563112 ANKRD36CQ5JPF3 1778 aa21.79■■□□□ 1.08
CLK3-210ENST00000563112 TMX4Q9H1E5 349 aaPredicted RBP21.78■■□□□ 1.08
CLK3-210ENST00000563112 GRIPAP1Q4V328 841 aa21.77■■□□□ 1.08
CLK3-210ENST00000563112 OLFM4Q6UX06 510 aa21.77■■□□□ 1.08
CLK3-210ENST00000563112 SH3TC1Q8TE82 1336 aa21.77■■□□□ 1.07
CLK3-210ENST00000563112 GOLGA2Q08379 1002 aa21.76■■□□□ 1.07
CLK3-210ENST00000563112 NCBP3Q53F19 620 aaKnown RBP21.76■■□□□ 1.07
CLK3-210ENST00000563112 WWC1Q8IX03 1113 aa21.76■■□□□ 1.07
CLK3-210ENST00000563112 C8orf58Q8NAV2 365 aa21.76■■□□□ 1.07
CLK3-210ENST00000563112 FSTL1Q12841 308 aa21.75■■□□□ 1.07
CLK3-210ENST00000563112 CCDC30Q5VVM6 783 aa21.75■■□□□ 1.07
CLK3-210ENST00000563112 RIC3Q7Z5B4 369 aa21.75■■□□□ 1.07
CLK3-210ENST00000563112 SYNE4Q8N205 404 aa21.75■■□□□ 1.07
CLK3-210ENST00000563112 ZNF277Q9NRM2 450 aaPredicted RBP21.75■■□□□ 1.07
CLK3-210ENST00000563112 PPEF1O14829 653 aaPredicted RBP21.74■■□□□ 1.07
CLK3-210ENST00000563112 HCLS1P14317 486 aaPredicted RBP21.74■■□□□ 1.07
CLK3-210ENST00000563112 C3orf67Q6ZVT6 689 aa21.74■■□□□ 1.07
CLK3-210ENST00000563112 PSMD1Q99460 953 aa21.74■■□□□ 1.07
CLK3-210ENST00000563112 ISCA1Q9BUE6 129 aa21.74■■□□□ 1.07
CLK3-210ENST00000563112 IARSP41252 1262 aaKnown RBP21.73■■□□□ 1.07
CLK3-210ENST00000563112 APLP1P51693 650 aa21.73■■□□□ 1.07
CLK3-210ENST00000563112 SMC1BQ8NDV3 1235 aa21.73■■□□□ 1.07
CLK3-210ENST00000563112 ATP5J2-PTCD1G3V325 749 aa21.72■■□□□ 1.07
CLK3-210ENST00000563112 TCERG1O14776 1098 aaKnown RBP21.72■■□□□ 1.07
CLK3-210ENST00000563112 DDX46Q7L014 1031 aaKnown RBP21.72■■□□□ 1.07
CLK3-210ENST00000563112 TSR2Q969E8 191 aaKnown RBP21.72■■□□□ 1.07
CLK3-210ENST00000563112 PHAXQ9H814 394 aaKnown RBP21.72■■□□□ 1.07
CLK3-210ENST00000563112 IL16Q14005 1332 aa21.72■■□□□ 1.07
CLK3-210ENST00000563112 DDNO94850 711 aaPredicted RBP21.71■■□□□ 1.07
CLK3-210ENST00000563112 DDX58O95786 925 aaKnown RBP21.71■■□□□ 1.07
CLK3-210ENST00000563112 TRIM28Q13263 835 aaKnown RBP21.71■■□□□ 1.07
CLK3-210ENST00000563112 JDP2Q8WYK2 163 aa21.71■■□□□ 1.07
CLK3-210ENST00000563112 WDR90Q96KV7 1748 aa21.7■■□□□ 1.06
CLK3-210ENST00000563112 BBOX1O75936 387 aa21.7■■□□□ 1.06
CLK3-210ENST00000563112 STK31Q9BXU1 1019 aa21.7■■□□□ 1.06
CLK3-210ENST00000563112 CEP350Q5VT06 3117 aa21.7■■□□□ 1.06
CLK3-210ENST00000563112 POTECB2RU33 542 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 TSPYL6Q8N831 410 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 ZNF428Q96B54 188 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 FAM89AQ96GI7 184 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 SALL2Q9Y467 1007 aaPredicted RBP21.69■■□□□ 1.06
CLK3-210ENST00000563112 ATP6V0A2Q9Y487 856 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 ABCC4O15439 1325 aa21.69■■□□□ 1.06
CLK3-210ENST00000563112 WDR63Q8IWG1 891 aa21.68■■□□□ 1.06
CLK3-210ENST00000563112 FAM9BQ8IZU0 186 aa21.68■■□□□ 1.06
CLK3-210ENST00000563112 SNED1Q8TER0 1413 aa21.67■■□□□ 1.06
CLK3-210ENST00000563112 IQCA1LA6NCM1 817 aa21.67■■□□□ 1.06
CLK3-210ENST00000563112 HSP90B1P14625 803 aaKnown RBP21.67■■□□□ 1.06
CLK3-210ENST00000563112 TWISTNBQ3B726 338 aaPredicted RBP21.67■■□□□ 1.06
CLK3-210ENST00000563112 MYD88Q99836 296 aa21.67■■□□□ 1.06
CLK3-210ENST00000563112 LAMB2P55268 1798 aa21.66■■□□□ 1.06
CLK3-210ENST00000563112 GRAPQ13588 217 aa21.66■■□□□ 1.06
CLK3-210ENST00000563112 SP8Q8IXZ3 490 aa21.66■■□□□ 1.06
CLK3-210ENST00000563112 LARGE2Q8N3Y3 721 aa21.66■■□□□ 1.06
CLK3-210ENST00000563112 SUPT20HQ8NEM7 779 aa21.66■■□□□ 1.06
CLK3-210ENST00000563112 GRAPLQ8TC17 118 aaPredicted RBP21.66■■□□□ 1.06
CLK3-210ENST00000563112 FZD9O00144 591 aa21.65■■□□□ 1.06
CLK3-210ENST00000563112 IRS4O14654 1257 aaPredicted RBP21.65■■□□□ 1.06
CLK3-210ENST00000563112 EIF6P56537 245 aaKnown RBP21.65■■□□□ 1.06
CLK3-210ENST00000563112 RTL5Q5HYW3 569 aaPredicted RBP21.65■■□□□ 1.06
CLK3-210ENST00000563112 TMC4Q7Z404 712 aa21.65■■□□□ 1.06
CLK3-210ENST00000563112 L3MBTL3Q96JM7 780 aaPredicted RBP21.65■■□□□ 1.06
CLK3-210ENST00000563112 ZNF541Q9H0D2 1346 aa21.64■■□□□ 1.05
CLK3-210ENST00000563112 SF3B3Q15393 1217 aaKnown RBP21.64■■□□□ 1.05
CLK3-210ENST00000563112 CCDC191Q8NCU4 936 aa21.64■■□□□ 1.05
CLK3-210ENST00000563112 METTL22Q9BUU2 404 aaPredicted RBP21.64■■□□□ 1.05
CLK3-210ENST00000563112 VPS33BQ9H267 617 aa21.64■■□□□ 1.05
CLK3-210ENST00000563112 DPP8Q6V1X1 898 aaPredicted RBP21.63■■□□□ 1.05
CLK3-210ENST00000563112 KSR2Q6VAB6 950 aa21.63■■□□□ 1.05
CLK3-210ENST00000563112 MPNDQ8N594 471 aa21.63■■□□□ 1.05
CLK3-210ENST00000563112 ZBTB38Q8NAP3 1195 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms